Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b22024 and SM_b21490 are separated by 135 nucleotides SM_b21490 and SM_b21491 are separated by 20 nucleotides SM_b21491 and SM_b21492 are separated by 242 nucleotides SM_b21492 and SM_b21493 are separated by 33 nucleotides
SM_b22024: SM_b22024 - cytochrome O ubiquinol oxidase CyoD, at 1,412,124 to 1,412,525
_b22024
SM_b21490: SM_b21490 - hypothetical protein, at 1,412,661 to 1,413,416
_b21490
SM_b21491: SM_b21491 - hypothetical protein, at 1,413,437 to 1,413,967
_b21491
SM_b21492: SM_b21492 - hypothetical protein, at 1,414,210 to 1,414,872
_b21492
SM_b21493: SM_b21493 - AsnC family transcriptional regulator, at 1,414,906 to 1,415,367
_b21493
Position (kb)
1413
1414 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1412.566 kb on + strand at 1412.567 kb on - strand at 1412.632 kb on + strand at 1412.946 kb on + strand, within SM_b21490 at 1413.363 kb on + strand at 1413.364 kb on - strand at 1413.603 kb on + strand, within SM_b21491 at 1413.603 kb on + strand, within SM_b21491 at 1413.604 kb on - strand, within SM_b21491 at 1413.604 kb on - strand, within SM_b21491 at 1413.630 kb on + strand, within SM_b21491 at 1413.720 kb on + strand, within SM_b21491 at 1413.721 kb on - strand, within SM_b21491 at 1413.792 kb on + strand, within SM_b21491 at 1413.793 kb on - strand, within SM_b21491 at 1413.886 kb on - strand, within SM_b21491 at 1413.886 kb on - strand, within SM_b21491 at 1413.886 kb on - strand, within SM_b21491 at 1413.886 kb on - strand, within SM_b21491 at 1414.524 kb on + strand, within SM_b21492 at 1414.526 kb on + strand, within SM_b21492 at 1414.587 kb on - strand, within SM_b21492 at 1414.676 kb on + strand, within SM_b21492 at 1414.677 kb on - strand, within SM_b21492 at 1414.677 kb on - strand, within SM_b21492 at 1414.677 kb on - strand, within SM_b21492 at 1414.677 kb on - strand, within SM_b21492 at 1414.710 kb on - strand, within SM_b21492 at 1414.848 kb on + strand at 1414.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,412,566 + -1.6 1,412,567 - -0.0 1,412,632 + +0.2 1,412,946 + SM_b21490 0.38 -0.8 1,413,363 + +0.9 1,413,364 - +0.3 1,413,603 + SM_b21491 0.31 +1.5 1,413,603 + SM_b21491 0.31 +1.3 1,413,604 - SM_b21491 0.31 +2.4 1,413,604 - SM_b21491 0.31 +1.7 1,413,630 + SM_b21491 0.36 +1.7 1,413,720 + SM_b21491 0.53 -1.8 1,413,721 - SM_b21491 0.53 +1.3 1,413,792 + SM_b21491 0.67 -1.4 1,413,793 - SM_b21491 0.67 +1.8 1,413,886 - SM_b21491 0.85 +1.3 1,413,886 - SM_b21491 0.85 +1.8 1,413,886 - SM_b21491 0.85 +0.4 1,413,886 - SM_b21491 0.85 -0.8 1,414,524 + SM_b21492 0.47 -2.7 1,414,526 + SM_b21492 0.48 -0.3 1,414,587 - SM_b21492 0.57 +0.8 1,414,676 + SM_b21492 0.70 +0.6 1,414,677 - SM_b21492 0.70 -0.6 1,414,677 - SM_b21492 0.70 +0.5 1,414,677 - SM_b21492 0.70 -0.1 1,414,677 - SM_b21492 0.70 +0.7 1,414,710 - SM_b21492 0.75 +1.2 1,414,848 + -1.9 1,414,889 + -0.6
Or see this region's nucleotide sequence