Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21270 and SM_b21271 are separated by 83 nucleotides SM_b21271 and SM_b21272 are separated by 147 nucleotides SM_b21272 and SM_b21273 overlap by 4 nucleotides
SM_b21270: SM_b21270 - transcriptional regulator, at 844,532 to 844,996
_b21270
SM_b21271: SM_b21271 - nucleotide-binding protein, at 845,080 to 845,829
_b21271
SM_b21272: SM_b21272 - LacI family transcriptional regulator, at 845,977 to 847,047
_b21272
SM_b21273: SM_b21273 - spermidineputrescine ABC transporter substrate-binding protein precursor, at 847,044 to 848,066
_b21273
Position (kb) 845
846
847
848 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 845.068 kb on + strand at 845.069 kb on - strand at 845.096 kb on - strand at 845.096 kb on - strand at 845.113 kb on + strand at 845.224 kb on + strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.227 kb on - strand, within SM_b21271 at 845.566 kb on + strand, within SM_b21271 at 845.566 kb on + strand, within SM_b21271 at 845.567 kb on - strand, within SM_b21271 at 845.715 kb on - strand, within SM_b21271 at 845.715 kb on - strand, within SM_b21271 at 845.882 kb on + strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.885 kb on + strand at 845.885 kb on + strand at 845.927 kb on + strand at 845.928 kb on - strand at 845.970 kb on + strand at 845.970 kb on + strand at 845.971 kb on - strand at 846.008 kb on + strand at 846.008 kb on + strand at 846.008 kb on + strand at 846.009 kb on - strand at 846.009 kb on - strand at 846.532 kb on - strand, within SM_b21272 at 846.532 kb on - strand, within SM_b21272 at 846.835 kb on - strand, within SM_b21272 at 846.835 kb on - strand, within SM_b21272 at 846.835 kb on - strand, within SM_b21272 at 846.948 kb on + strand at 846.948 kb on + strand at 846.948 kb on + strand at 846.949 kb on - strand at 846.949 kb on - strand at 846.949 kb on - strand at 847.014 kb on - strand at 847.122 kb on - strand at 847.122 kb on - strand at 847.134 kb on + strand at 847.170 kb on + strand, within SM_b21273 at 847.170 kb on + strand, within SM_b21273 at 847.343 kb on + strand, within SM_b21273 at 847.344 kb on - strand, within SM_b21273 at 847.374 kb on + strand, within SM_b21273 at 847.420 kb on - strand, within SM_b21273 at 847.446 kb on + strand, within SM_b21273 at 847.446 kb on + strand, within SM_b21273 at 847.587 kb on - strand, within SM_b21273 at 847.962 kb on + strand, within SM_b21273 at 847.962 kb on + strand, within SM_b21273 at 847.963 kb on - strand, within SM_b21273 at 847.963 kb on - strand, within SM_b21273
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 845,068 + +0.5 845,069 - +1.1 845,096 - +0.1 845,096 - +0.3 845,113 + -2.7 845,224 + SM_b21271 0.19 +2.0 845,225 - SM_b21271 0.19 +0.1 845,225 - SM_b21271 0.19 -0.5 845,227 - SM_b21271 0.20 +0.4 845,566 + SM_b21271 0.65 -1.2 845,566 + SM_b21271 0.65 +0.0 845,567 - SM_b21271 0.65 +0.9 845,715 - SM_b21271 0.85 -0.6 845,715 - SM_b21271 0.85 -2.2 845,882 + +0.1 845,883 - -3.2 845,883 - -2.1 845,883 - -1.6 845,883 - -0.2 845,885 + -0.7 845,885 + -0.6 845,927 + -3.4 845,928 - -3.0 845,970 + +0.7 845,970 + +0.5 845,971 - +1.2 846,008 + -0.7 846,008 + +0.5 846,008 + +1.3 846,009 - -1.5 846,009 - +0.1 846,532 - SM_b21272 0.52 +0.2 846,532 - SM_b21272 0.52 -0.2 846,835 - SM_b21272 0.80 +1.6 846,835 - SM_b21272 0.80 +1.2 846,835 - SM_b21272 0.80 -0.4 846,948 + -0.5 846,948 + +0.2 846,948 + +1.1 846,949 - +1.3 846,949 - -0.1 846,949 - -0.6 847,014 - +0.2 847,122 - -0.1 847,122 - +1.7 847,134 + +0.2 847,170 + SM_b21273 0.12 -0.2 847,170 + SM_b21273 0.12 -0.0 847,343 + SM_b21273 0.29 +0.7 847,344 - SM_b21273 0.29 +0.2 847,374 + SM_b21273 0.32 -3.0 847,420 - SM_b21273 0.37 -1.9 847,446 + SM_b21273 0.39 -1.4 847,446 + SM_b21273 0.39 +1.7 847,587 - SM_b21273 0.53 +0.0 847,962 + SM_b21273 0.90 -3.0 847,962 + SM_b21273 0.90 +0.0 847,963 - SM_b21273 0.90 -0.4 847,963 - SM_b21273 0.90 -0.3
Or see this region's nucleotide sequence