Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21266 and SM_b21267 are separated by 58 nucleotides SM_b21267 and SM_b21268 are separated by 151 nucleotides SM_b21268 and SM_b21269 overlap by 53 nucleotides
SM_b21266: SM_b21266 - hypothetical protein, at 839,609 to 840,796
_b21266
SM_b21267: SM_b21267 - hypothetical protein, at 840,855 to 841,532
_b21267
SM_b21268: SM_b21268 - hypothetical protein, at 841,684 to 842,397
_b21268
SM_b21269: SM_b21269 - ABC transporter ATPase, at 842,345 to 844,435
_b21269
Position (kb) 841
842
843 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 840.775 kb on + strand at 840.775 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.892 kb on - strand at 840.892 kb on - strand at 840.892 kb on - strand at 840.892 kb on - strand at 841.338 kb on + strand, within SM_b21267 at 841.339 kb on - strand, within SM_b21267 at 841.459 kb on + strand, within SM_b21267 at 841.459 kb on + strand, within SM_b21267 at 841.460 kb on - strand at 841.526 kb on + strand at 841.526 kb on + strand at 841.527 kb on - strand at 841.527 kb on - strand at 841.527 kb on - strand at 841.527 kb on - strand at 841.538 kb on + strand at 841.538 kb on + strand at 841.545 kb on + strand at 841.545 kb on + strand at 841.545 kb on + strand at 841.546 kb on - strand at 841.663 kb on + strand at 841.704 kb on + strand at 841.704 kb on + strand at 841.705 kb on - strand at 841.705 kb on - strand at 841.744 kb on + strand at 841.744 kb on + strand at 841.782 kb on - strand, within SM_b21268 at 841.813 kb on + strand, within SM_b21268 at 841.814 kb on - strand, within SM_b21268 at 842.041 kb on + strand, within SM_b21268 at 842.042 kb on - strand, within SM_b21268 at 842.043 kb on + strand, within SM_b21268 at 842.043 kb on + strand, within SM_b21268 at 842.043 kb on + strand, within SM_b21268 at 842.049 kb on + strand, within SM_b21268 at 842.049 kb on + strand, within SM_b21268 at 842.049 kb on + strand, within SM_b21268 at 842.050 kb on - strand, within SM_b21268 at 842.050 kb on - strand, within SM_b21268 at 842.053 kb on + strand, within SM_b21268 at 842.054 kb on - strand, within SM_b21268 at 842.054 kb on - strand, within SM_b21268 at 842.336 kb on - strand at 842.455 kb on + strand at 842.456 kb on - strand at 842.456 kb on - strand at 842.517 kb on - strand at 842.525 kb on + strand at 842.526 kb on - strand at 842.591 kb on + strand, within SM_b21269 at 842.592 kb on - strand, within SM_b21269 at 842.607 kb on - strand, within SM_b21269 at 842.663 kb on + strand, within SM_b21269 at 842.732 kb on - strand at 842.732 kb on - strand, within SM_b21269 at 842.735 kb on + strand, within SM_b21269 at 843.010 kb on - strand, within SM_b21269 at 843.022 kb on + strand, within SM_b21269 at 843.024 kb on + strand, within SM_b21269 at 843.024 kb on + strand, within SM_b21269 at 843.025 kb on - strand, within SM_b21269 at 843.025 kb on - strand, within SM_b21269 at 843.060 kb on + strand, within SM_b21269 at 843.061 kb on - strand, within SM_b21269 at 843.065 kb on + strand, within SM_b21269 at 843.251 kb on + strand, within SM_b21269
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 840,775 + -0.3 840,775 + +1.1 840,891 + -1.5 840,891 + +1.2 840,891 + -0.7 840,891 + -1.5 840,891 + -3.2 840,891 + -0.1 840,892 - +0.9 840,892 - -1.2 840,892 - +0.6 840,892 - -0.2 841,338 + SM_b21267 0.71 -0.4 841,339 - SM_b21267 0.71 -1.5 841,459 + SM_b21267 0.89 +1.2 841,459 + SM_b21267 0.89 -2.0 841,460 - +2.1 841,526 + -0.9 841,526 + -3.8 841,527 - -3.2 841,527 - -3.7 841,527 - +1.0 841,527 - -1.6 841,538 + +1.3 841,538 + -0.3 841,545 + +3.9 841,545 + +0.6 841,545 + -0.7 841,546 - +1.8 841,663 + -0.6 841,704 + -0.1 841,704 + -0.6 841,705 - +1.4 841,705 - +1.7 841,744 + -0.4 841,744 + -0.1 841,782 - SM_b21268 0.14 +0.5 841,813 + SM_b21268 0.18 +0.3 841,814 - SM_b21268 0.18 +2.1 842,041 + SM_b21268 0.50 -4.7 842,042 - SM_b21268 0.50 +0.5 842,043 + SM_b21268 0.50 +2.6 842,043 + SM_b21268 0.50 +1.2 842,043 + SM_b21268 0.50 +0.5 842,049 + SM_b21268 0.51 +2.5 842,049 + SM_b21268 0.51 +1.1 842,049 + SM_b21268 0.51 +0.6 842,050 - SM_b21268 0.51 +0.5 842,050 - SM_b21268 0.51 -0.5 842,053 + SM_b21268 0.52 +2.0 842,054 - SM_b21268 0.52 +0.1 842,054 - SM_b21268 0.52 +0.8 842,336 - +0.2 842,455 + +1.5 842,456 - +0.1 842,456 - +0.1 842,517 - +1.9 842,525 + -0.2 842,526 - +2.4 842,591 + SM_b21269 0.12 -1.6 842,592 - SM_b21269 0.12 +2.1 842,607 - SM_b21269 0.13 +0.9 842,663 + SM_b21269 0.15 +1.6 842,732 - +2.1 842,732 - SM_b21269 0.19 +1.0 842,735 + SM_b21269 0.19 -0.1 843,010 - SM_b21269 0.32 -0.3 843,022 + SM_b21269 0.32 +1.3 843,024 + SM_b21269 0.32 -1.6 843,024 + SM_b21269 0.32 +0.1 843,025 - SM_b21269 0.33 -1.5 843,025 - SM_b21269 0.33 +0.3 843,060 + SM_b21269 0.34 +0.9 843,061 - SM_b21269 0.34 +0.5 843,065 + SM_b21269 0.34 -1.5 843,251 + SM_b21269 0.43 +1.9
Or see this region's nucleotide sequence