Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21254 and SM_b21255 are separated by 228 nucleotides SM_b21255 and SM_b21256 overlap by 11 nucleotides
SM_b21254: SM_b21254 - hypothetical protein, at 824,431 to 825,261
_b21254
SM_b21255: SM_b21255 - hypothetical protein, at 825,490 to 826,692
_b21255
SM_b21256: SM_b21256 - nucleotide sugar oxidase, at 826,682 to 828,115
_b21256
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 825.276 kb on - strand at 825.393 kb on - strand at 825.415 kb on + strand at 825.415 kb on + strand at 825.415 kb on + strand at 825.416 kb on - strand at 825.416 kb on - strand at 825.416 kb on - strand at 825.424 kb on + strand at 825.425 kb on - strand at 825.475 kb on - strand at 825.572 kb on - strand at 825.572 kb on - strand at 825.572 kb on - strand at 825.649 kb on + strand, within SM_b21255 at 825.650 kb on - strand, within SM_b21255 at 825.650 kb on - strand, within SM_b21255 at 825.928 kb on + strand, within SM_b21255 at 825.928 kb on + strand, within SM_b21255 at 825.929 kb on - strand, within SM_b21255 at 825.929 kb on - strand, within SM_b21255 at 825.954 kb on - strand, within SM_b21255 at 826.496 kb on + strand, within SM_b21255 at 826.497 kb on - strand, within SM_b21255 at 826.497 kb on - strand, within SM_b21255 at 826.542 kb on + strand, within SM_b21255 at 826.543 kb on - strand, within SM_b21255 at 826.572 kb on + strand at 826.572 kb on + strand at 826.572 kb on + strand at 826.573 kb on - strand at 826.573 kb on - strand at 826.573 kb on - strand at 826.669 kb on - strand at 826.776 kb on + strand at 826.914 kb on + strand, within SM_b21256 at 826.915 kb on - strand, within SM_b21256 at 826.952 kb on + strand, within SM_b21256 at 826.952 kb on + strand, within SM_b21256 at 827.002 kb on - strand, within SM_b21256 at 827.142 kb on - strand, within SM_b21256 at 827.142 kb on - strand, within SM_b21256 at 827.148 kb on + strand, within SM_b21256 at 827.173 kb on - strand, within SM_b21256 at 827.173 kb on - strand, within SM_b21256 at 827.220 kb on + strand, within SM_b21256 at 827.233 kb on - strand, within SM_b21256 at 827.233 kb on - strand, within SM_b21256 at 827.295 kb on + strand, within SM_b21256 at 827.345 kb on - strand, within SM_b21256 at 827.490 kb on + strand, within SM_b21256 at 827.491 kb on - strand, within SM_b21256 at 827.587 kb on + strand, within SM_b21256 at 827.607 kb on + strand, within SM_b21256 at 827.607 kb on + strand, within SM_b21256 at 827.608 kb on - strand, within SM_b21256 at 827.671 kb on + strand, within SM_b21256 at 827.672 kb on - strand, within SM_b21256
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 825,276 - -1.3 825,393 - +1.7 825,415 + -1.4 825,415 + +1.1 825,415 + -1.3 825,416 - +0.0 825,416 - -1.2 825,416 - -0.3 825,424 + -2.3 825,425 - -0.6 825,475 - +0.8 825,572 - +0.1 825,572 - +2.1 825,572 - -3.0 825,649 + SM_b21255 0.13 -1.5 825,650 - SM_b21255 0.13 -2.1 825,650 - SM_b21255 0.13 -2.6 825,928 + SM_b21255 0.36 +1.1 825,928 + SM_b21255 0.36 -2.3 825,929 - SM_b21255 0.36 -1.1 825,929 - SM_b21255 0.36 +0.1 825,954 - SM_b21255 0.39 -3.7 826,496 + SM_b21255 0.84 -1.2 826,497 - SM_b21255 0.84 -0.2 826,497 - SM_b21255 0.84 -3.4 826,542 + SM_b21255 0.87 -3.3 826,543 - SM_b21255 0.88 -0.7 826,572 + +0.1 826,572 + +0.6 826,572 + +2.8 826,573 - +0.2 826,573 - -1.8 826,573 - -0.1 826,669 - -0.4 826,776 + +0.9 826,914 + SM_b21256 0.16 -0.6 826,915 - SM_b21256 0.16 -1.7 826,952 + SM_b21256 0.19 -0.1 826,952 + SM_b21256 0.19 -2.4 827,002 - SM_b21256 0.22 +3.8 827,142 - SM_b21256 0.32 -0.5 827,142 - SM_b21256 0.32 -0.3 827,148 + SM_b21256 0.32 +1.4 827,173 - SM_b21256 0.34 +1.4 827,173 - SM_b21256 0.34 -0.2 827,220 + SM_b21256 0.38 +0.2 827,233 - SM_b21256 0.38 -0.1 827,233 - SM_b21256 0.38 +0.2 827,295 + SM_b21256 0.43 +0.2 827,345 - SM_b21256 0.46 +0.1 827,490 + SM_b21256 0.56 -0.2 827,491 - SM_b21256 0.56 +0.8 827,587 + SM_b21256 0.63 +0.6 827,607 + SM_b21256 0.65 -1.2 827,607 + SM_b21256 0.65 +2.1 827,608 - SM_b21256 0.65 +0.2 827,671 + SM_b21256 0.69 +2.9 827,672 - SM_b21256 0.69 -0.7
Or see this region's nucleotide sequence