Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21251

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21250 and SM_b21251 are separated by 105 nucleotidesSM_b21251 and SM_b21252 are separated by 77 nucleotides SM_b21250: SM_b21250 - glycosyltransferase, at 818,897 to 820,180 _b21250 SM_b21251: SM_b21251 - hypothetical protein, at 820,286 to 822,502 _b21251 SM_b21252: SM_b21252 - glycosyltransferase, at 822,580 to 823,677 _b21252 Position (kb) 820 821 822 823Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 819.456 kb on + strand, within SM_b21250at 819.456 kb on + strand, within SM_b21250at 819.457 kb on - strand, within SM_b21250at 819.457 kb on - strand, within SM_b21250at 819.458 kb on + strand, within SM_b21250at 819.458 kb on + strand, within SM_b21250at 819.530 kb on - strand, within SM_b21250at 819.595 kb on + strand, within SM_b21250at 819.595 kb on + strand, within SM_b21250at 819.596 kb on - strand, within SM_b21250at 819.828 kb on + strand, within SM_b21250at 819.829 kb on - strand, within SM_b21250at 820.067 kb on + strandat 820.068 kb on - strandat 820.084 kb on - strandat 820.190 kb on + strandat 820.325 kb on + strandat 820.325 kb on + strandat 820.325 kb on + strandat 820.326 kb on - strandat 820.326 kb on - strandat 820.326 kb on - strandat 820.326 kb on - strandat 820.326 kb on - strandat 820.336 kb on - strandat 820.343 kb on + strandat 820.395 kb on + strandat 820.395 kb on + strandat 820.396 kb on - strandat 820.396 kb on - strandat 820.396 kb on - strandat 820.876 kb on - strand, within SM_b21251at 821.023 kb on - strand, within SM_b21251at 821.072 kb on + strand, within SM_b21251at 821.072 kb on + strand, within SM_b21251at 821.072 kb on + strand, within SM_b21251at 821.073 kb on - strand, within SM_b21251at 821.073 kb on - strand, within SM_b21251at 821.077 kb on - strand, within SM_b21251at 821.077 kb on - strand, within SM_b21251at 821.165 kb on - strand, within SM_b21251at 821.165 kb on - strand, within SM_b21251at 821.328 kb on + strand, within SM_b21251at 821.328 kb on + strand, within SM_b21251at 821.329 kb on - strand, within SM_b21251at 821.387 kb on + strand, within SM_b21251at 821.388 kb on - strand, within SM_b21251at 821.412 kb on + strand, within SM_b21251at 821.413 kb on - strand, within SM_b21251at 821.536 kb on - strand, within SM_b21251at 821.737 kb on + strand, within SM_b21251at 821.738 kb on - strand, within SM_b21251at 821.738 kb on - strand, within SM_b21251at 822.500 kb on + strandat 822.501 kb on - strandat 822.568 kb on - strandat 822.844 kb on + strand, within SM_b21252at 822.844 kb on + strand, within SM_b21252at 822.844 kb on + strand, within SM_b21252at 822.845 kb on - strand, within SM_b21252at 822.847 kb on + strand, within SM_b21252at 822.847 kb on + strand, within SM_b21252at 822.847 kb on + strand, within SM_b21252at 822.848 kb on - strand, within SM_b21252at 822.848 kb on - strand, within SM_b21252at 822.901 kb on + strand, within SM_b21252at 822.901 kb on + strand, within SM_b21252at 822.901 kb on + strand, within SM_b21252at 822.902 kb on - strand, within SM_b21252at 822.902 kb on - strand, within SM_b21252at 822.923 kb on - strand, within SM_b21252at 822.923 kb on - strand, within SM_b21252at 823.158 kb on + strand, within SM_b21252at 823.176 kb on + strand, within SM_b21252at 823.180 kb on + strand, within SM_b21252at 823.180 kb on + strand, within SM_b21252at 823.181 kb on - strand, within SM_b21252at 823.181 kb on - strand, within SM_b21252at 823.181 kb on - strand, within SM_b21252at 823.181 kb on - strand, within SM_b21252at 823.367 kb on - strand, within SM_b21252at 823.394 kb on - strand, within SM_b21252at 823.400 kb on + strand, within SM_b21252at 823.400 kb on + strand, within SM_b21252at 823.400 kb on + strand, within SM_b21252at 823.405 kb on + strand, within SM_b21252at 823.405 kb on + strand, within SM_b21252at 823.405 kb on + strand, within SM_b21252at 823.405 kb on + strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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819,456 + SM_b21250 0.44 +3.0
819,456 + SM_b21250 0.44 -1.3
819,457 - SM_b21250 0.44 +0.2
819,457 - SM_b21250 0.44 -0.5
819,458 + SM_b21250 0.44 -1.4
819,458 + SM_b21250 0.44 +0.1
819,530 - SM_b21250 0.49 -0.9
819,595 + SM_b21250 0.54 -1.3
819,595 + SM_b21250 0.54 +0.7
819,596 - SM_b21250 0.54 -0.5
819,828 + SM_b21250 0.73 -2.9
819,829 - SM_b21250 0.73 -0.1
820,067 + +0.2
820,068 - +0.3
820,084 - -1.7
820,190 + -0.2
820,325 + +2.1
820,325 + +0.2
820,325 + +2.1
820,326 - -0.5
820,326 - +0.3
820,326 - +0.1
820,326 - -3.5
820,326 - -0.6
820,336 - +1.1
820,343 + -1.7
820,395 + -3.4
820,395 + +0.3
820,396 - -0.2
820,396 - -1.5
820,396 - +1.1
820,876 - SM_b21251 0.27 -0.2
821,023 - SM_b21251 0.33 -2.6
821,072 + SM_b21251 0.35 -1.4
821,072 + SM_b21251 0.35 -1.2
821,072 + SM_b21251 0.35 +0.5
821,073 - SM_b21251 0.35 -2.2
821,073 - SM_b21251 0.35 -0.9
821,077 - SM_b21251 0.36 -0.4
821,077 - SM_b21251 0.36 -1.7
821,165 - SM_b21251 0.40 +5.5
821,165 - SM_b21251 0.40 -2.1
821,328 + SM_b21251 0.47 +0.3
821,328 + SM_b21251 0.47 +1.7
821,329 - SM_b21251 0.47 -1.5
821,387 + SM_b21251 0.50 -1.8
821,388 - SM_b21251 0.50 -2.3
821,412 + SM_b21251 0.51 -0.5
821,413 - SM_b21251 0.51 +0.2
821,536 - SM_b21251 0.56 +2.3
821,737 + SM_b21251 0.65 +3.1
821,738 - SM_b21251 0.65 -1.8
821,738 - SM_b21251 0.65 -0.1
822,500 + +0.6
822,501 - +1.2
822,568 - +0.4
822,844 + SM_b21252 0.24 +0.5
822,844 + SM_b21252 0.24 +0.4
822,844 + SM_b21252 0.24 +1.3
822,845 - SM_b21252 0.24 +0.9
822,847 + SM_b21252 0.24 +0.5
822,847 + SM_b21252 0.24 +2.4
822,847 + SM_b21252 0.24 +1.1
822,848 - SM_b21252 0.24 +0.8
822,848 - SM_b21252 0.24 -0.9
822,901 + SM_b21252 0.29 -0.2
822,901 + SM_b21252 0.29 +1.5
822,901 + SM_b21252 0.29 -1.9
822,902 - SM_b21252 0.29 +0.6
822,902 - SM_b21252 0.29 +2.1
822,923 - SM_b21252 0.31 +2.4
822,923 - SM_b21252 0.31 +0.5
823,158 + SM_b21252 0.53 +0.7
823,176 + SM_b21252 0.54 -0.9
823,180 + SM_b21252 0.55 -0.0
823,180 + SM_b21252 0.55 +0.5
823,181 - SM_b21252 0.55 -2.7
823,181 - SM_b21252 0.55 +1.6
823,181 - SM_b21252 0.55 +0.6
823,181 - SM_b21252 0.55 +0.4
823,367 - SM_b21252 0.72 -3.3
823,394 - SM_b21252 0.74 +0.2
823,400 + SM_b21252 0.75 +0.4
823,400 + SM_b21252 0.75 -0.8
823,400 + SM_b21252 0.75 -3.2
823,405 + SM_b21252 0.75 -2.8
823,405 + SM_b21252 0.75 +0.5
823,405 + SM_b21252 0.75 -0.3
823,405 + SM_b21252 0.75 +0.5
823,406 - SM_b21252 0.75 +1.7
823,406 - SM_b21252 0.75 +0.4
823,406 - SM_b21252 0.75 +2.0
823,406 - SM_b21252 0.75 +0.5
823,406 - SM_b21252 0.75 -2.2

Or see this region's nucleotide sequence