Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21191 and SM_b21192 are separated by 225 nucleotides SM_b21192 and SM_b21196 are separated by 644 nucleotides
SM_b21191: SM_b21191 - surface saccharide ABC transporter ATP-binding/membrane spanning protein, at 941,311 to 943,104
_b21191
SM_b21192: SM_b21192 - fructose-1,6-bisphosphate aldolase, at 943,330 to 944,373
_b21192
SM_b21196: SM_b21196 - oligopeptide uptake ABC transporter substrate-binding protein precursor, at 945,018 to 946,616
_b21196
Position (kb) 943
944
945 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 942.670 kb on + strand, within SM_b21191 at 942.671 kb on - strand, within SM_b21191 at 942.758 kb on - strand, within SM_b21191 at 943.069 kb on + strand at 943.497 kb on + strand, within SM_b21192 at 943.548 kb on + strand, within SM_b21192 at 943.632 kb on - strand, within SM_b21192 at 943.772 kb on + strand, within SM_b21192 at 943.773 kb on - strand, within SM_b21192 at 943.773 kb on - strand, within SM_b21192 at 944.013 kb on + strand, within SM_b21192 at 944.013 kb on + strand, within SM_b21192 at 944.014 kb on - strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.156 kb on + strand, within SM_b21192 at 944.156 kb on + strand, within SM_b21192 at 944.157 kb on - strand, within SM_b21192 at 944.283 kb on + strand at 944.284 kb on - strand at 944.285 kb on + strand at 944.322 kb on - strand at 944.377 kb on + strand at 944.378 kb on - strand at 944.426 kb on + strand at 944.426 kb on + strand at 944.427 kb on - strand at 944.427 kb on - strand at 944.427 kb on - strand at 944.427 kb on - strand at 944.517 kb on - strand at 944.796 kb on + strand at 945.103 kb on + strand at 945.103 kb on + strand at 945.192 kb on + strand, within SM_b21196 at 945.193 kb on - strand, within SM_b21196 at 945.210 kb on + strand, within SM_b21196 at 945.210 kb on + strand, within SM_b21196 at 945.210 kb on + strand, within SM_b21196 at 945.210 kb on + strand, within SM_b21196 at 945.212 kb on - strand, within SM_b21196 at 945.279 kb on + strand, within SM_b21196 at 945.280 kb on - strand, within SM_b21196
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 942,670 + SM_b21191 0.76 -2.5 942,671 - SM_b21191 0.76 +1.3 942,758 - SM_b21191 0.81 +2.8 943,069 + +1.2 943,497 + SM_b21192 0.16 -1.7 943,548 + SM_b21192 0.21 +0.9 943,632 - SM_b21192 0.29 -1.1 943,772 + SM_b21192 0.42 +1.7 943,773 - SM_b21192 0.42 +2.0 943,773 - SM_b21192 0.42 +1.0 944,013 + SM_b21192 0.65 +2.3 944,013 + SM_b21192 0.65 +1.1 944,014 - SM_b21192 0.66 +1.3 944,015 + SM_b21192 0.66 +1.5 944,015 + SM_b21192 0.66 +1.1 944,015 + SM_b21192 0.66 +3.6 944,015 + SM_b21192 0.66 -3.8 944,016 - SM_b21192 0.66 +3.0 944,016 - SM_b21192 0.66 -3.1 944,016 - SM_b21192 0.66 +1.0 944,016 - SM_b21192 0.66 -2.2 944,016 - SM_b21192 0.66 +0.3 944,016 - SM_b21192 0.66 +0.6 944,156 + SM_b21192 0.79 -2.5 944,156 + SM_b21192 0.79 +0.6 944,157 - SM_b21192 0.79 +0.0 944,283 + +0.4 944,284 - +0.3 944,285 + +2.1 944,322 - +0.6 944,377 + +3.2 944,378 - +0.0 944,426 + -0.5 944,426 + +1.3 944,427 - -0.7 944,427 - -2.3 944,427 - -2.5 944,427 - +0.1 944,517 - +0.7 944,796 + -0.9 945,103 + +0.4 945,103 + -1.5 945,192 + SM_b21196 0.11 +0.6 945,193 - SM_b21196 0.11 +0.4 945,210 + SM_b21196 0.12 -1.4 945,210 + SM_b21196 0.12 +0.8 945,210 + SM_b21196 0.12 +0.1 945,210 + SM_b21196 0.12 -2.3 945,212 - SM_b21196 0.12 -1.4 945,279 + SM_b21196 0.16 -0.8 945,280 - SM_b21196 0.16 +1.1
Or see this region's nucleotide sequence