Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21114 and SM_b21115 are separated by 25 nucleotides SM_b21115 and SM_b21116 are separated by 213 nucleotides
SM_b21114: SM_b21114 - nitrate transport protein, at 755,267 to 756,592
_b21114
SM_b21115: SM_b21115 - response regulator protein, at 756,618 to 757,106
_b21115
SM_b21116: SM_b21116 - trifolitoxin biosynthesis protein, at 757,320 to 758,051
_b21116
Position (kb) 756
757
758 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 755.794 kb on + strand, within SM_b21114 at 756.045 kb on + strand, within SM_b21114 at 756.046 kb on - strand, within SM_b21114 at 756.050 kb on - strand, within SM_b21114 at 756.195 kb on + strand, within SM_b21114 at 756.196 kb on - strand, within SM_b21114 at 756.196 kb on - strand, within SM_b21114 at 756.569 kb on + strand at 756.569 kb on + strand at 756.569 kb on + strand at 756.569 kb on + strand at 756.753 kb on - strand, within SM_b21115 at 757.041 kb on + strand, within SM_b21115 at 757.041 kb on + strand, within SM_b21115 at 757.151 kb on + strand at 757.151 kb on + strand at 757.152 kb on - strand at 757.214 kb on - strand at 757.567 kb on + strand, within SM_b21116 at 757.567 kb on + strand, within SM_b21116 at 757.567 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.753 kb on + strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.812 kb on + strand, within SM_b21116
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 755,794 + SM_b21114 0.40 +3.0 756,045 + SM_b21114 0.59 +0.5 756,046 - SM_b21114 0.59 +1.7 756,050 - SM_b21114 0.59 -1.7 756,195 + SM_b21114 0.70 -2.6 756,196 - SM_b21114 0.70 -0.5 756,196 - SM_b21114 0.70 -0.5 756,569 + -2.9 756,569 + +0.6 756,569 + -0.1 756,569 + +0.3 756,753 - SM_b21115 0.28 +0.1 757,041 + SM_b21115 0.87 +0.9 757,041 + SM_b21115 0.87 +1.2 757,151 + -1.8 757,151 + -2.3 757,152 - -2.4 757,214 - +0.6 757,567 + SM_b21116 0.34 +0.3 757,567 + SM_b21116 0.34 -2.6 757,567 + SM_b21116 0.34 +0.7 757,749 + SM_b21116 0.59 -2.3 757,749 + SM_b21116 0.59 +2.7 757,749 + SM_b21116 0.59 -1.6 757,750 - SM_b21116 0.59 +1.4 757,750 - SM_b21116 0.59 -2.5 757,750 - SM_b21116 0.59 -0.2 757,750 - SM_b21116 0.59 -1.3 757,753 + SM_b21116 0.59 -4.2 757,754 - SM_b21116 0.59 +0.7 757,754 - SM_b21116 0.59 -1.1 757,754 - SM_b21116 0.59 -0.5 757,754 - SM_b21116 0.59 -3.7 757,812 + SM_b21116 0.67 -0.3
Or see this region's nucleotide sequence