Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21103 and SM_b21104 are separated by 69 nucleotides SM_b21104 and SM_b21105 overlap by 1 nucleotides SM_b21105 and SM_b21106 are separated by 6 nucleotides
SM_b21103: SM_b21103 - ABC transporter for L-Fucose, periplasmic substrate-binding protein <small>(from data)</small>, at 744,973 to 746,292
_b21103
SM_b21104: SM_b21104 - ABC transporter for L-Fucose, permease component 1 <small>(from data)</small>, at 746,362 to 747,258
_b21104
SM_b21105: SM_b21105 - ABC transporter for L-Fucose, permease component 2 <small>(from data)</small>, at 747,258 to 748,124
_b21105
SM_b21106: SM_b21106 - ABC transporter for L-Fucose, ATPase component <small>(from data)</small>, at 748,131 to 749,228
_b21106
Position (kb) 747
748
749 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 746.458 kb on + strand, within SM_b21104 at 746.459 kb on - strand, within SM_b21104 at 746.527 kb on + strand, within SM_b21104 at 746.527 kb on + strand, within SM_b21104 at 746.528 kb on - strand, within SM_b21104 at 746.528 kb on - strand, within SM_b21104 at 746.657 kb on - strand, within SM_b21104 at 746.657 kb on - strand, within SM_b21104 at 746.989 kb on + strand, within SM_b21104 at 746.989 kb on + strand, within SM_b21104 at 746.990 kb on - strand, within SM_b21104 at 746.990 kb on - strand, within SM_b21104 at 746.990 kb on - strand, within SM_b21104 at 747.049 kb on + strand, within SM_b21104 at 747.049 kb on + strand, within SM_b21104 at 747.050 kb on - strand, within SM_b21104 at 747.130 kb on + strand, within SM_b21104 at 747.131 kb on - strand, within SM_b21104 at 747.170 kb on - strand at 747.170 kb on - strand at 747.205 kb on + strand at 747.256 kb on + strand at 747.256 kb on + strand at 747.263 kb on + strand at 747.263 kb on + strand at 747.521 kb on - strand, within SM_b21105 at 747.678 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.727 kb on - strand, within SM_b21105 at 747.727 kb on - strand, within SM_b21105 at 747.922 kb on - strand, within SM_b21105 at 747.942 kb on - strand, within SM_b21105 at 747.987 kb on + strand, within SM_b21105 at 748.142 kb on + strand at 748.380 kb on + strand, within SM_b21106 at 748.380 kb on + strand, within SM_b21106 at 748.380 kb on + strand, within SM_b21106 at 748.380 kb on + strand, within SM_b21106 at 748.380 kb on + strand, within SM_b21106 at 748.381 kb on - strand, within SM_b21106 at 748.381 kb on - strand, within SM_b21106 at 748.381 kb on - strand, within SM_b21106 at 748.381 kb on - strand, within SM_b21106 at 748.397 kb on + strand, within SM_b21106 at 748.397 kb on + strand, within SM_b21106 at 748.398 kb on - strand, within SM_b21106 at 748.398 kb on - strand, within SM_b21106 at 748.415 kb on + strand, within SM_b21106 at 748.613 kb on - strand, within SM_b21106 at 748.613 kb on - strand, within SM_b21106 at 748.695 kb on + strand, within SM_b21106 at 748.695 kb on + strand, within SM_b21106 at 748.695 kb on + strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.983 kb on + strand, within SM_b21106 at 748.983 kb on + strand, within SM_b21106 at 748.984 kb on - strand, within SM_b21106 at 748.984 kb on - strand, within SM_b21106
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 746,458 + SM_b21104 0.11 -0.0 746,459 - SM_b21104 0.11 -1.1 746,527 + SM_b21104 0.18 -1.7 746,527 + SM_b21104 0.18 +0.2 746,528 - SM_b21104 0.19 -3.0 746,528 - SM_b21104 0.19 -0.6 746,657 - SM_b21104 0.33 +0.4 746,657 - SM_b21104 0.33 +0.6 746,989 + SM_b21104 0.70 -1.3 746,989 + SM_b21104 0.70 +0.4 746,990 - SM_b21104 0.70 +0.6 746,990 - SM_b21104 0.70 +1.8 746,990 - SM_b21104 0.70 -0.6 747,049 + SM_b21104 0.77 -0.2 747,049 + SM_b21104 0.77 -1.7 747,050 - SM_b21104 0.77 -3.2 747,130 + SM_b21104 0.86 +0.5 747,131 - SM_b21104 0.86 +1.1 747,170 - +0.9 747,170 - -0.9 747,205 + +0.8 747,256 + +3.7 747,256 + +0.9 747,263 + -2.8 747,263 + -1.5 747,521 - SM_b21105 0.30 -0.2 747,678 + SM_b21105 0.48 -1.0 747,726 + SM_b21105 0.54 -2.7 747,726 + SM_b21105 0.54 -1.6 747,726 + SM_b21105 0.54 -1.7 747,726 + SM_b21105 0.54 +0.3 747,726 + SM_b21105 0.54 +0.8 747,727 - SM_b21105 0.54 +0.5 747,727 - SM_b21105 0.54 -1.0 747,922 - SM_b21105 0.77 +2.1 747,942 - SM_b21105 0.79 -0.3 747,987 + SM_b21105 0.84 -2.0 748,142 + +2.2 748,380 + SM_b21106 0.23 +2.6 748,380 + SM_b21106 0.23 -0.1 748,380 + SM_b21106 0.23 -1.6 748,380 + SM_b21106 0.23 -1.5 748,380 + SM_b21106 0.23 +0.1 748,381 - SM_b21106 0.23 +0.6 748,381 - SM_b21106 0.23 +0.1 748,381 - SM_b21106 0.23 +0.7 748,381 - SM_b21106 0.23 -0.4 748,397 + SM_b21106 0.24 -0.9 748,397 + SM_b21106 0.24 -3.5 748,398 - SM_b21106 0.24 -2.2 748,398 - SM_b21106 0.24 -0.9 748,415 + SM_b21106 0.26 +1.3 748,613 - SM_b21106 0.44 -2.3 748,613 - SM_b21106 0.44 +0.9 748,695 + SM_b21106 0.51 +0.2 748,695 + SM_b21106 0.51 -0.9 748,695 + SM_b21106 0.51 -0.3 748,696 - SM_b21106 0.51 -0.3 748,696 - SM_b21106 0.51 -2.9 748,696 - SM_b21106 0.51 -1.2 748,696 - SM_b21106 0.51 +0.4 748,696 - SM_b21106 0.51 +1.4 748,696 - SM_b21106 0.51 -0.2 748,983 + SM_b21106 0.78 -0.0 748,983 + SM_b21106 0.78 +1.1 748,984 - SM_b21106 0.78 -2.5 748,984 - SM_b21106 0.78 +0.1
Or see this region's nucleotide sequence