Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21074

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21073 and SM_b21074 are separated by 71 nucleotidesSM_b21074 and SM_b21075 are separated by 280 nucleotides SM_b21073: SM_b21073 - OMA family outer membrane saccharide export protein, at 709,463 to 710,830 _b21073 SM_b21074: SM_b21074 - glycosyltransferase, at 710,902 to 711,801 _b21074 SM_b21075: SM_b21075 - glycosyltransferase, at 712,082 to 713,314 _b21075 Position (kb) 710 711 712Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 709.918 kb on - strand, within SM_b21073at 709.918 kb on - strand, within SM_b21073at 709.979 kb on + strand, within SM_b21073at 709.980 kb on - strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.989 kb on - strand, within SM_b21073at 709.989 kb on - strand, within SM_b21073at 709.989 kb on - strand, within SM_b21073at 710.058 kb on - strand, within SM_b21073at 710.114 kb on + strand, within SM_b21073at 710.230 kb on + strand, within SM_b21073at 710.231 kb on - strand, within SM_b21073at 710.231 kb on - strand, within SM_b21073at 710.376 kb on - strand, within SM_b21073at 710.445 kb on + strand, within SM_b21073at 710.445 kb on + strand, within SM_b21073at 710.445 kb on + strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.503 kb on + strand, within SM_b21073at 710.504 kb on - strand, within SM_b21073at 710.504 kb on - strand, within SM_b21073at 710.518 kb on + strand, within SM_b21073at 710.533 kb on - strand, within SM_b21073at 710.620 kb on + strand, within SM_b21073at 710.647 kb on + strand, within SM_b21073at 710.687 kb on + strand, within SM_b21073at 710.688 kb on - strand, within SM_b21073at 710.712 kb on + strandat 710.712 kb on + strandat 710.748 kb on - strandat 710.748 kb on - strandat 710.803 kb on + strandat 710.804 kb on - strandat 710.830 kb on + strandat 710.903 kb on + strandat 710.903 kb on + strandat 710.911 kb on + strandat 710.925 kb on - strandat 710.966 kb on - strandat 710.966 kb on - strandat 710.968 kb on - strandat 711.002 kb on + strand, within SM_b21074at 711.002 kb on + strand, within SM_b21074at 711.002 kb on + strand, within SM_b21074at 711.003 kb on - strand, within SM_b21074at 711.003 kb on - strand, within SM_b21074at 711.003 kb on - strand, within SM_b21074at 711.053 kb on - strand, within SM_b21074at 711.053 kb on - strand, within SM_b21074at 711.072 kb on + strand, within SM_b21074at 711.073 kb on - strand, within SM_b21074at 711.101 kb on + strand, within SM_b21074at 711.323 kb on + strand, within SM_b21074at 711.324 kb on - strand, within SM_b21074at 711.324 kb on - strand, within SM_b21074at 711.513 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.631 kb on + strand, within SM_b21074at 711.785 kb on - strandat 711.785 kb on - strandat 711.808 kb on + strandat 711.842 kb on + strandat 711.875 kb on + strandat 711.876 kb on - strandat 711.876 kb on - strandat 711.914 kb on + strandat 711.915 kb on - strandat 711.923 kb on + strandat 711.923 kb on + strandat 711.965 kb on - strandat 712.088 kb on + strandat 712.089 kb on - strandat 712.089 kb on - strandat 712.089 kb on - strandat 712.090 kb on + strandat 712.090 kb on + strandat 712.126 kb on + strandat 712.126 kb on + strandat 712.126 kb on + strandat 712.197 kb on + strandat 712.248 kb on + strand, within SM_b21075at 712.248 kb on + strand, within SM_b21075at 712.248 kb on + strand, within SM_b21075at 712.309 kb on - strand, within SM_b21075at 712.309 kb on - strand, within SM_b21075at 712.319 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.510 kb on - strand, within SM_b21075at 712.510 kb on - strand, within SM_b21075at 712.514 kb on + strand, within SM_b21075at 712.514 kb on + strand, within SM_b21075at 712.515 kb on - strand, within SM_b21075at 712.515 kb on - strand, within SM_b21075at 712.518 kb on + strand, within SM_b21075at 712.518 kb on + strand, within SM_b21075at 712.519 kb on - strand, within SM_b21075at 712.559 kb on + strand, within SM_b21075at 712.560 kb on - strand, within SM_b21075at 712.610 kb on + strand, within SM_b21075at 712.611 kb on - strand, within SM_b21075at 712.621 kb on + strand, within SM_b21075at 712.621 kb on + strand, within SM_b21075at 712.622 kb on - strand, within SM_b21075at 712.627 kb on - strand, within SM_b21075at 712.627 kb on - strand, within SM_b21075at 712.627 kb on - strand, within SM_b21075at 712.685 kb on + strand, within SM_b21075at 712.686 kb on - strand, within SM_b21075at 712.686 kb on - strand, within SM_b21075at 712.699 kb on + strand, within SM_b21075at 712.787 kb on + strand, within SM_b21075at 712.788 kb on - strand, within SM_b21075at 712.788 kb on - strand, within SM_b21075at 712.788 kb on - strand, within SM_b21075at 712.790 kb on + strand, within SM_b21075at 712.790 kb on + strand, within SM_b21075at 712.791 kb on - strand, within SM_b21075at 712.791 kb on - strand, within SM_b21075at 712.791 kb on - strand, within SM_b21075at 712.796 kb on - strand, within SM_b21075

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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709,918 - SM_b21073 0.33 -2.6
709,918 - SM_b21073 0.33 -0.5
709,979 + SM_b21073 0.38 -0.7
709,980 - SM_b21073 0.38 +0.2
709,988 + SM_b21073 0.38 -1.3
709,988 + SM_b21073 0.38 +0.2
709,988 + SM_b21073 0.38 +1.6
709,988 + SM_b21073 0.38 -0.2
709,988 + SM_b21073 0.38 +0.8
709,989 - SM_b21073 0.38 +1.0
709,989 - SM_b21073 0.38 +2.4
709,989 - SM_b21073 0.38 -2.5
710,058 - SM_b21073 0.43 +0.6
710,114 + SM_b21073 0.48 -3.5
710,230 + SM_b21073 0.56 -2.6
710,231 - SM_b21073 0.56 -1.7
710,231 - SM_b21073 0.56 +0.5
710,376 - SM_b21073 0.67 -0.5
710,445 + SM_b21073 0.72 +0.5
710,445 + SM_b21073 0.72 +0.7
710,445 + SM_b21073 0.72 -2.1
710,446 - SM_b21073 0.72 +2.5
710,446 - SM_b21073 0.72 -0.7
710,446 - SM_b21073 0.72 -0.1
710,446 - SM_b21073 0.72 +1.4
710,446 - SM_b21073 0.72 +0.1
710,446 - SM_b21073 0.72 +0.6
710,503 + SM_b21073 0.76 +1.6
710,504 - SM_b21073 0.76 -1.5
710,504 - SM_b21073 0.76 -0.7
710,518 + SM_b21073 0.77 +0.6
710,533 - SM_b21073 0.78 +1.1
710,620 + SM_b21073 0.85 -2.7
710,647 + SM_b21073 0.87 +0.1
710,687 + SM_b21073 0.89 -1.1
710,688 - SM_b21073 0.90 +0.2
710,712 + +2.1
710,712 + +1.1
710,748 - +0.5
710,748 - -0.1
710,803 + +1.5
710,804 - -0.2
710,830 + +0.6
710,903 + +1.3
710,903 + -0.4
710,911 + -0.0
710,925 - -2.0
710,966 - -0.1
710,966 - +0.5
710,968 - +0.8
711,002 + SM_b21074 0.11 +1.1
711,002 + SM_b21074 0.11 +0.9
711,002 + SM_b21074 0.11 +1.6
711,003 - SM_b21074 0.11 -2.6
711,003 - SM_b21074 0.11 +1.5
711,003 - SM_b21074 0.11 -1.8
711,053 - SM_b21074 0.17 +1.4
711,053 - SM_b21074 0.17 +1.9
711,072 + SM_b21074 0.19 -0.5
711,073 - SM_b21074 0.19 +2.5
711,101 + SM_b21074 0.22 +1.3
711,323 + SM_b21074 0.47 +0.8
711,324 - SM_b21074 0.47 +0.8
711,324 - SM_b21074 0.47 -0.9
711,513 + SM_b21074 0.68 -0.7
711,610 + SM_b21074 0.79 +1.2
711,610 + SM_b21074 0.79 +0.0
711,610 + SM_b21074 0.79 +0.6
711,610 + SM_b21074 0.79 +0.2
711,611 - SM_b21074 0.79 +1.3
711,611 - SM_b21074 0.79 -1.3
711,611 - SM_b21074 0.79 -0.1
711,611 - SM_b21074 0.79 +2.1
711,631 + SM_b21074 0.81 +0.9
711,785 - -0.5
711,785 - +0.6
711,808 + -0.1
711,842 + +0.5
711,875 + -1.0
711,876 - +0.2
711,876 - -0.6
711,914 + -0.1
711,915 - -0.4
711,923 + -1.4
711,923 + -0.3
711,965 - -1.2
712,088 + +0.6
712,089 - +2.1
712,089 - -0.3
712,089 - +0.3
712,090 + +1.1
712,090 + -1.0
712,126 + -0.2
712,126 + +1.0
712,126 + +0.1
712,197 + +1.0
712,248 + SM_b21075 0.13 -1.3
712,248 + SM_b21075 0.13 +0.1
712,248 + SM_b21075 0.13 +0.4
712,309 - SM_b21075 0.18 -1.4
712,309 - SM_b21075 0.18 +1.0
712,319 + SM_b21075 0.19 +1.1
712,509 + SM_b21075 0.35 +0.4
712,509 + SM_b21075 0.35 -1.0
712,509 + SM_b21075 0.35 +0.9
712,509 + SM_b21075 0.35 +0.7
712,510 - SM_b21075 0.35 +1.1
712,510 - SM_b21075 0.35 +0.2
712,514 + SM_b21075 0.35 -2.3
712,514 + SM_b21075 0.35 +0.9
712,515 - SM_b21075 0.35 +0.6
712,515 - SM_b21075 0.35 -0.3
712,518 + SM_b21075 0.35 -0.1
712,518 + SM_b21075 0.35 -3.5
712,519 - SM_b21075 0.35 -0.1
712,559 + SM_b21075 0.39 -1.9
712,560 - SM_b21075 0.39 -1.1
712,610 + SM_b21075 0.43 +0.1
712,611 - SM_b21075 0.43 +0.5
712,621 + SM_b21075 0.44 +1.7
712,621 + SM_b21075 0.44 -1.3
712,622 - SM_b21075 0.44 -2.8
712,627 - SM_b21075 0.44 -1.6
712,627 - SM_b21075 0.44 -2.1
712,627 - SM_b21075 0.44 -3.5
712,685 + SM_b21075 0.49 -1.6
712,686 - SM_b21075 0.49 -0.1
712,686 - SM_b21075 0.49 +0.2
712,699 + SM_b21075 0.50 +3.9
712,787 + SM_b21075 0.57 -0.9
712,788 - SM_b21075 0.57 -0.9
712,788 - SM_b21075 0.57 +1.0
712,788 - SM_b21075 0.57 -2.7
712,790 + SM_b21075 0.57 -1.8
712,790 + SM_b21075 0.57 -0.9
712,791 - SM_b21075 0.58 -1.1
712,791 - SM_b21075 0.58 -0.4
712,791 - SM_b21075 0.58 -3.5
712,796 - SM_b21075 0.58 +1.5

Or see this region's nucleotide sequence