Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21071 and SM_b21072 are separated by 44 nucleotides SM_b21072 and SM_b21073 are separated by 427 nucleotides
SM_b21071: SM_b21071 - UDP-phosphate galactosephosphotransferase, at 708,086 to 708,736
_b21071
SM_b21072: SM_b21072 - hypothetical protein, at 708,781 to 709,035
_b21072
SM_b21073: SM_b21073 - OMA family outer membrane saccharide export protein, at 709,463 to 710,830
_b21073
Position (kb) 708
709
710 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 707.789 kb on + strand at 707.789 kb on + strand at 707.792 kb on + strand at 707.792 kb on + strand at 707.793 kb on - strand at 707.795 kb on + strand at 707.795 kb on + strand at 707.796 kb on - strand at 707.823 kb on + strand at 707.868 kb on + strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.873 kb on - strand at 708.055 kb on + strand at 708.055 kb on + strand at 708.056 kb on - strand at 708.196 kb on - strand, within SM_b21071 at 708.293 kb on + strand, within SM_b21071 at 708.296 kb on - strand, within SM_b21071 at 708.341 kb on + strand, within SM_b21071 at 708.342 kb on - strand, within SM_b21071 at 708.473 kb on - strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.620 kb on + strand, within SM_b21071 at 708.621 kb on - strand, within SM_b21071 at 708.650 kb on + strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.655 kb on - strand, within SM_b21071 at 708.695 kb on - strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.755 kb on + strand at 708.755 kb on + strand at 708.756 kb on - strand at 708.845 kb on + strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.849 kb on + strand, within SM_b21072 at 708.850 kb on - strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.872 kb on + strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 709.035 kb on + strand at 709.147 kb on + strand at 709.178 kb on + strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.291 kb on + strand at 709.292 kb on - strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.383 kb on - strand at 709.383 kb on - strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.424 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.445 kb on - strand at 709.445 kb on - strand at 709.452 kb on + strand at 709.453 kb on - strand at 709.453 kb on - strand at 709.465 kb on - strand at 709.662 kb on + strand, within SM_b21073 at 709.662 kb on + strand, within SM_b21073 at 709.737 kb on - strand, within SM_b21073 at 709.821 kb on + strand, within SM_b21073 at 709.822 kb on - strand, within SM_b21073 at 709.861 kb on + strand, within SM_b21073 at 709.901 kb on + strand, within SM_b21073 at 709.918 kb on - strand, within SM_b21073 at 709.918 kb on - strand, within SM_b21073 at 709.979 kb on + strand, within SM_b21073 at 709.980 kb on - strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 707,789 + -1.3 707,789 + -0.3 707,792 + +0.1 707,792 + +0.1 707,793 - +0.3 707,795 + +2.5 707,795 + +3.1 707,796 - -0.2 707,823 + +0.9 707,868 + -2.5 707,869 - +0.6 707,869 - -0.4 707,869 - -2.4 707,873 - -1.3 708,055 + -0.3 708,055 + -1.5 708,056 - -1.6 708,196 - SM_b21071 0.17 -3.9 708,293 + SM_b21071 0.32 -3.2 708,296 - SM_b21071 0.32 -0.1 708,341 + SM_b21071 0.39 +1.5 708,342 - SM_b21071 0.39 +1.5 708,473 - SM_b21071 0.59 -2.4 708,597 + SM_b21071 0.78 +1.0 708,597 + SM_b21071 0.78 +0.0 708,597 + SM_b21071 0.78 +0.5 708,598 - SM_b21071 0.79 +0.4 708,598 - SM_b21071 0.79 -3.0 708,598 - SM_b21071 0.79 +0.5 708,598 - SM_b21071 0.79 +1.8 708,620 + SM_b21071 0.82 +0.8 708,621 - SM_b21071 0.82 -1.3 708,650 + SM_b21071 0.87 -2.2 708,651 - SM_b21071 0.87 -1.3 708,651 - SM_b21071 0.87 +1.0 708,651 - SM_b21071 0.87 +1.9 708,655 - SM_b21071 0.87 +0.2 708,695 - +0.6 708,734 + +0.1 708,734 + +0.9 708,734 + -0.1 708,755 + -2.0 708,755 + +2.6 708,756 - -2.6 708,845 + SM_b21072 0.25 -0.3 708,846 - SM_b21072 0.25 +0.4 708,846 - SM_b21072 0.25 -0.9 708,846 - SM_b21072 0.25 -3.6 708,849 + SM_b21072 0.27 -0.9 708,850 - SM_b21072 0.27 -0.3 708,856 + SM_b21072 0.29 -2.7 708,856 + SM_b21072 0.29 -2.5 708,856 + SM_b21072 0.29 -2.0 708,872 + SM_b21072 0.36 -3.6 708,873 - SM_b21072 0.36 +0.3 708,873 - SM_b21072 0.36 -4.0 709,035 + -0.2 709,147 + -0.2 709,178 + -0.9 709,179 - +0.3 709,179 - -1.4 709,179 - -1.8 709,179 - -0.4 709,179 - +0.7 709,179 - +2.1 709,291 + -0.7 709,292 - +0.3 709,382 + -0.5 709,382 + -1.1 709,382 + -0.7 709,382 + -0.4 709,382 + +0.1 709,382 + -0.3 709,383 - -0.5 709,383 - -0.4 709,390 + -3.8 709,390 + +0.1 709,424 + +0.1 709,444 + -1.3 709,444 + -0.5 709,444 + -0.5 709,445 - +0.1 709,445 - -0.7 709,452 + +0.5 709,453 - +0.8 709,453 - -0.1 709,465 - -3.1 709,662 + SM_b21073 0.15 -3.0 709,662 + SM_b21073 0.15 -2.9 709,737 - SM_b21073 0.20 +0.8 709,821 + SM_b21073 0.26 -0.7 709,822 - SM_b21073 0.26 -3.2 709,861 + SM_b21073 0.29 -0.1 709,901 + SM_b21073 0.32 +0.3 709,918 - SM_b21073 0.33 -2.6 709,918 - SM_b21073 0.33 -0.5 709,979 + SM_b21073 0.38 -0.7 709,980 - SM_b21073 0.38 +0.2 709,988 + SM_b21073 0.38 -1.3 709,988 + SM_b21073 0.38 +0.2 709,988 + SM_b21073 0.38 +1.6 709,988 + SM_b21073 0.38 -0.2 709,988 + SM_b21073 0.38 +0.8 709,989 - SM_b21073 0.38 +1.0 709,989 - SM_b21073 0.38 +2.4 709,989 - SM_b21073 0.38 -2.5
Or see this region's nucleotide sequence