Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20497 and SM_b20498 are separated by 30 nucleotides SM_b20498 and SM_b20499 are separated by 66 nucleotides
SM_b20497: SM_b20497 - L-xylulose kinase, at 516,973 to 518,502
_b20497
SM_b20498: SM_b20498 - hypothetical protein, at 518,533 to 519,375
_b20498
SM_b20499: SM_b20499 - glycerol-3-phosphate dehydrogenase, at 519,442 to 521,175
_b20499
Position (kb) 518
519
520 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 517.628 kb on + strand, within SM_b20497 at 518.050 kb on - strand, within SM_b20497 at 518.138 kb on + strand, within SM_b20497 at 518.246 kb on + strand, within SM_b20497 at 518.246 kb on + strand, within SM_b20497 at 518.247 kb on - strand, within SM_b20497 at 518.247 kb on - strand, within SM_b20497 at 518.316 kb on + strand, within SM_b20497 at 518.316 kb on + strand, within SM_b20497 at 518.317 kb on - strand, within SM_b20497 at 518.317 kb on - strand, within SM_b20497 at 518.488 kb on + strand at 518.492 kb on + strand at 518.492 kb on + strand at 518.492 kb on + strand at 518.493 kb on - strand at 518.493 kb on - strand at 518.493 kb on - strand at 518.547 kb on - strand at 518.633 kb on + strand, within SM_b20498 at 518.633 kb on + strand, within SM_b20498 at 518.648 kb on + strand, within SM_b20498 at 518.648 kb on + strand, within SM_b20498 at 518.648 kb on + strand, within SM_b20498 at 518.876 kb on + strand, within SM_b20498 at 518.876 kb on + strand, within SM_b20498 at 518.877 kb on - strand, within SM_b20498 at 518.918 kb on - strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 519.119 kb on + strand, within SM_b20498 at 519.120 kb on - strand, within SM_b20498 at 519.363 kb on + strand at 519.364 kb on - strand at 519.377 kb on + strand at 519.378 kb on + strand at 519.379 kb on - strand at 519.379 kb on - strand at 519.462 kb on + strand at 519.723 kb on + strand, within SM_b20499 at 519.724 kb on - strand, within SM_b20499 at 519.763 kb on + strand, within SM_b20499 at 519.764 kb on - strand, within SM_b20499 at 520.019 kb on - strand, within SM_b20499 at 520.124 kb on + strand, within SM_b20499 at 520.125 kb on - strand, within SM_b20499 at 520.187 kb on + strand, within SM_b20499 at 520.188 kb on - strand, within SM_b20499 at 520.188 kb on - strand, within SM_b20499 at 520.188 kb on - strand, within SM_b20499 at 520.311 kb on - strand, within SM_b20499 at 520.313 kb on + strand, within SM_b20499
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 517,628 + SM_b20497 0.43 -0.4 518,050 - SM_b20497 0.70 -0.4 518,138 + SM_b20497 0.76 -2.7 518,246 + SM_b20497 0.83 -0.0 518,246 + SM_b20497 0.83 -0.8 518,247 - SM_b20497 0.83 -0.6 518,247 - SM_b20497 0.83 +1.2 518,316 + SM_b20497 0.88 +0.8 518,316 + SM_b20497 0.88 -3.4 518,317 - SM_b20497 0.88 +0.6 518,317 - SM_b20497 0.88 +1.2 518,488 + +0.9 518,492 + +0.0 518,492 + +1.0 518,492 + -0.1 518,493 - +1.3 518,493 - -1.3 518,493 - -1.8 518,547 - -0.1 518,633 + SM_b20498 0.12 -1.9 518,633 + SM_b20498 0.12 -2.9 518,648 + SM_b20498 0.14 +0.1 518,648 + SM_b20498 0.14 +0.5 518,648 + SM_b20498 0.14 -0.4 518,876 + SM_b20498 0.41 +0.2 518,876 + SM_b20498 0.41 +0.6 518,877 - SM_b20498 0.41 -0.9 518,918 - SM_b20498 0.46 -0.1 518,936 + SM_b20498 0.48 -2.5 518,936 + SM_b20498 0.48 -0.1 518,936 + SM_b20498 0.48 -0.3 518,936 + SM_b20498 0.48 -1.0 519,119 + SM_b20498 0.70 -2.7 519,120 - SM_b20498 0.70 +0.3 519,363 + -1.0 519,364 - -1.6 519,377 + +2.2 519,378 + +0.6 519,379 - -1.9 519,379 - -2.8 519,462 + -2.7 519,723 + SM_b20499 0.16 +0.3 519,724 - SM_b20499 0.16 +1.4 519,763 + SM_b20499 0.19 -2.4 519,764 - SM_b20499 0.19 -1.9 520,019 - SM_b20499 0.33 -0.4 520,124 + SM_b20499 0.39 -1.5 520,125 - SM_b20499 0.39 +1.1 520,187 + SM_b20499 0.43 +0.2 520,188 - SM_b20499 0.43 -4.3 520,188 - SM_b20499 0.43 +1.0 520,188 - SM_b20499 0.43 +0.9 520,311 - SM_b20499 0.50 +2.7 520,313 + SM_b20499 0.50 -1.1
Or see this region's nucleotide sequence