Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20395 and SM_b20396 are separated by 43 nucleotides SM_b20396 and SM_b20397 overlap by 4 nucleotides SM_b20397 and SM_b20398 are separated by 166 nucleotides
SM_b20395: SM_b20395 - dehydrogenase, at 409,180 to 411,429
_b20395
SM_b20396: SM_b20396 - dehydrogenase, at 411,473 to 412,456
_b20396
SM_b20397: SM_b20397 - oxidoreductase, at 412,453 to 413,019
_b20397
SM_b20398: SM_b20398 - hypothetical protein, at 413,186 to 413,680
_b20398
Position (kb) 411
412
413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 410.835 kb on + strand, within SM_b20395 at 410.843 kb on + strand, within SM_b20395 at 411.006 kb on - strand, within SM_b20395 at 411.151 kb on + strand, within SM_b20395 at 411.151 kb on + strand, within SM_b20395 at 411.208 kb on + strand at 411.209 kb on - strand at 411.211 kb on + strand at 411.212 kb on - strand at 411.212 kb on - strand at 411.294 kb on - strand at 411.451 kb on - strand at 411.451 kb on - strand at 411.474 kb on + strand at 411.474 kb on + strand at 411.475 kb on - strand at 411.475 kb on - strand at 411.747 kb on + strand, within SM_b20396 at 411.747 kb on + strand, within SM_b20396 at 411.747 kb on + strand, within SM_b20396 at 411.748 kb on - strand, within SM_b20396 at 411.748 kb on - strand, within SM_b20396 at 411.775 kb on - strand, within SM_b20396 at 411.965 kb on - strand, within SM_b20396 at 411.965 kb on - strand, within SM_b20396 at 411.965 kb on - strand, within SM_b20396 at 412.243 kb on + strand, within SM_b20396 at 412.243 kb on + strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.441 kb on - strand at 412.508 kb on + strand at 412.508 kb on + strand at 412.509 kb on - strand at 412.509 kb on - strand at 412.509 kb on - strand at 412.670 kb on + strand, within SM_b20397 at 412.696 kb on + strand, within SM_b20397 at 412.696 kb on + strand, within SM_b20397 at 412.697 kb on - strand, within SM_b20397 at 412.870 kb on - strand, within SM_b20397 at 413.132 kb on - strand at 413.192 kb on + strand at 413.192 kb on + strand at 413.193 kb on - strand at 413.193 kb on - strand at 413.374 kb on + strand, within SM_b20398
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 410,835 + SM_b20395 0.74 +0.4 410,843 + SM_b20395 0.74 +0.3 411,006 - SM_b20395 0.81 -1.0 411,151 + SM_b20395 0.88 -0.4 411,151 + SM_b20395 0.88 -0.8 411,208 + +0.9 411,209 - -1.4 411,211 + -3.4 411,212 - -2.1 411,212 - -2.4 411,294 - +1.0 411,451 - -2.0 411,451 - +0.9 411,474 + +1.0 411,474 + +1.8 411,475 - +0.7 411,475 - -1.1 411,747 + SM_b20396 0.28 -0.3 411,747 + SM_b20396 0.28 -2.6 411,747 + SM_b20396 0.28 +0.4 411,748 - SM_b20396 0.28 -0.5 411,748 - SM_b20396 0.28 -1.4 411,775 - SM_b20396 0.31 -2.0 411,965 - SM_b20396 0.50 -3.7 411,965 - SM_b20396 0.50 -1.9 411,965 - SM_b20396 0.50 +2.6 412,243 + SM_b20396 0.78 -1.9 412,243 + SM_b20396 0.78 +0.1 412,244 - SM_b20396 0.78 +0.5 412,244 - SM_b20396 0.78 -1.7 412,244 - SM_b20396 0.78 -0.8 412,441 - +0.5 412,508 + +0.4 412,508 + -1.1 412,509 - +0.1 412,509 - -0.7 412,509 - +1.4 412,670 + SM_b20397 0.38 -0.4 412,696 + SM_b20397 0.43 +2.3 412,696 + SM_b20397 0.43 -2.5 412,697 - SM_b20397 0.43 -0.6 412,870 - SM_b20397 0.74 +0.6 413,132 - +1.6 413,192 + -1.9 413,192 + +0.5 413,193 - -1.0 413,193 - -2.3 413,374 + SM_b20398 0.38 +1.1
Or see this region's nucleotide sequence