Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20374 and SM_b20375 are separated by 20 nucleotides SM_b20375 and SM_b20376 are separated by 203 nucleotides SM_b20376 and SM_b20377 are separated by 43 nucleotides
SM_b20374: SM_b20374 - substrate-binding protein, at 385,654 to 386,646
_b20374
SM_b20375: SM_b20375 - transcriptional regulator, at 386,667 to 387,437
_b20375
SM_b20376: SM_b20376 - hypothetical protein, at 387,641 to 388,021
_b20376
SM_b20377: SM_b20377 - translation initiation inhibitor protein, at 388,065 to 388,448
_b20377
Position (kb) 386
387
388 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 386.205 kb on - strand, within SM_b20374 at 386.315 kb on + strand, within SM_b20374 at 386.517 kb on - strand, within SM_b20374 at 386.556 kb on - strand at 386.724 kb on + strand at 386.724 kb on + strand at 386.724 kb on + strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.728 kb on + strand at 386.728 kb on + strand at 386.729 kb on - strand at 386.845 kb on + strand, within SM_b20375 at 386.927 kb on - strand, within SM_b20375 at 387.753 kb on + strand, within SM_b20376 at 387.755 kb on + strand, within SM_b20376 at 387.756 kb on - strand, within SM_b20376 at 387.756 kb on - strand, within SM_b20376 at 387.795 kb on + strand, within SM_b20376 at 387.795 kb on + strand, within SM_b20376 at 387.796 kb on - strand, within SM_b20376 at 387.866 kb on + strand, within SM_b20376 at 387.867 kb on - strand, within SM_b20376 at 387.867 kb on - strand, within SM_b20376 at 387.929 kb on + strand, within SM_b20376 at 387.930 kb on - strand, within SM_b20376 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.181 kb on - strand, within SM_b20377
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 386,205 - SM_b20374 0.55 -0.1 386,315 + SM_b20374 0.67 +2.7 386,517 - SM_b20374 0.87 +0.3 386,556 - +0.0 386,724 + +0.8 386,724 + -0.6 386,724 + +0.8 386,725 - -0.1 386,725 - +1.5 386,725 - -3.8 386,725 - -0.1 386,725 - -3.2 386,725 - +0.6 386,725 - +0.5 386,728 + +0.2 386,728 + -2.0 386,729 - +3.2 386,845 + SM_b20375 0.23 -0.5 386,927 - SM_b20375 0.34 -1.1 387,753 + SM_b20376 0.29 -0.3 387,755 + SM_b20376 0.30 -0.3 387,756 - SM_b20376 0.30 -0.4 387,756 - SM_b20376 0.30 -0.1 387,795 + SM_b20376 0.40 +3.2 387,795 + SM_b20376 0.40 -3.0 387,796 - SM_b20376 0.41 +0.5 387,866 + SM_b20376 0.59 +0.2 387,867 - SM_b20376 0.59 -1.6 387,867 - SM_b20376 0.59 -0.1 387,929 + SM_b20376 0.76 +2.2 387,930 - SM_b20376 0.76 -1.3 388,180 + SM_b20377 0.30 +0.7 388,180 + SM_b20377 0.30 +0.3 388,180 + SM_b20377 0.30 -0.2 388,180 + SM_b20377 0.30 +0.9 388,180 + SM_b20377 0.30 +0.6 388,181 - SM_b20377 0.30 -1.4
Or see this region's nucleotide sequence