Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20259 and SM_b20260 are separated by 47 nucleotides SM_b20260 and SM_b20261 are separated by 63 nucleotides
SM_b20259: SM_b20259 - dihydrodipicolinate synthase, at 264,068 to 265,030
_b20259
SM_b20260: SM_b20260 - hypothetical protein, at 265,078 to 265,470
_b20260
SM_b20261: SM_b20261 - malate dehydrogenase, at 265,534 to 266,571
_b20261
Position (kb) 265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 264.200 kb on + strand, within SM_b20259 at 264.270 kb on + strand, within SM_b20259 at 264.271 kb on - strand, within SM_b20259 at 264.376 kb on - strand, within SM_b20259 at 264.376 kb on - strand, within SM_b20259 at 264.439 kb on - strand, within SM_b20259 at 264.439 kb on - strand, within SM_b20259 at 264.473 kb on + strand, within SM_b20259 at 264.474 kb on - strand, within SM_b20259 at 264.474 kb on - strand, within SM_b20259 at 264.485 kb on + strand, within SM_b20259 at 264.486 kb on - strand, within SM_b20259 at 264.486 kb on - strand, within SM_b20259 at 264.486 kb on - strand, within SM_b20259 at 264.488 kb on + strand, within SM_b20259 at 264.711 kb on + strand, within SM_b20259 at 264.854 kb on + strand, within SM_b20259 at 264.980 kb on + strand at 264.980 kb on + strand at 265.020 kb on - strand at 265.142 kb on - strand, within SM_b20260 at 265.290 kb on - strand, within SM_b20260 at 265.340 kb on + strand, within SM_b20260 at 265.341 kb on - strand, within SM_b20260 at 265.341 kb on - strand, within SM_b20260 at 265.799 kb on + strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 266.045 kb on + strand, within SM_b20261 at 266.046 kb on - strand, within SM_b20261 at 266.327 kb on - strand, within SM_b20261
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 264,200 + SM_b20259 0.14 -0.0 264,270 + SM_b20259 0.21 -1.8 264,271 - SM_b20259 0.21 +0.2 264,376 - SM_b20259 0.32 +0.9 264,376 - SM_b20259 0.32 +1.2 264,439 - SM_b20259 0.39 -0.1 264,439 - SM_b20259 0.39 +0.4 264,473 + SM_b20259 0.42 -0.5 264,474 - SM_b20259 0.42 +0.2 264,474 - SM_b20259 0.42 +0.2 264,485 + SM_b20259 0.43 +0.2 264,486 - SM_b20259 0.43 -2.5 264,486 - SM_b20259 0.43 -0.4 264,486 - SM_b20259 0.43 -0.4 264,488 + SM_b20259 0.44 +3.6 264,711 + SM_b20259 0.67 -0.7 264,854 + SM_b20259 0.82 -0.9 264,980 + +1.0 264,980 + -2.8 265,020 - -0.1 265,142 - SM_b20260 0.16 -3.2 265,290 - SM_b20260 0.54 +0.2 265,340 + SM_b20260 0.67 +2.2 265,341 - SM_b20260 0.67 +2.5 265,341 - SM_b20260 0.67 +0.4 265,799 + SM_b20261 0.26 +0.7 265,800 - SM_b20261 0.26 -0.6 265,800 - SM_b20261 0.26 +2.5 265,800 - SM_b20261 0.26 +0.0 266,045 + SM_b20261 0.49 +4.1 266,046 - SM_b20261 0.49 -0.3 266,327 - SM_b20261 0.76 -2.2
Or see this region's nucleotide sequence