Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20235 and SM_b20236 are separated by 119 nucleotides SM_b20236 and SM_b20238 are separated by 327 nucleotides
SM_b20235: SM_b20235 - sugar ABC transporter ATP-binding protein, at 240,520 to 241,611
_b20235
SM_b20236: SM_b20236 - hypothetical protein, at 241,731 to 242,075
_b20236
SM_b20238: SM_b20238 - hypothetical protein, at 242,403 to 243,197
_b20238
Position (kb) 241
242
243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 240.749 kb on + strand, within SM_b20235 at 240.769 kb on + strand, within SM_b20235 at 240.769 kb on + strand, within SM_b20235 at 240.769 kb on + strand, within SM_b20235 at 240.770 kb on - strand, within SM_b20235 at 240.770 kb on - strand, within SM_b20235 at 240.778 kb on + strand, within SM_b20235 at 241.081 kb on - strand, within SM_b20235 at 241.081 kb on - strand, within SM_b20235 at 241.081 kb on - strand, within SM_b20235 at 241.084 kb on + strand, within SM_b20235 at 241.084 kb on + strand, within SM_b20235 at 241.085 kb on - strand, within SM_b20235 at 241.085 kb on - strand, within SM_b20235 at 241.085 kb on - strand at 241.424 kb on + strand, within SM_b20235 at 241.425 kb on - strand, within SM_b20235 at 241.689 kb on - strand at 241.689 kb on - strand at 241.856 kb on + strand, within SM_b20236 at 241.929 kb on - strand, within SM_b20236 at 241.935 kb on + strand, within SM_b20236 at 242.018 kb on - strand, within SM_b20236 at 242.035 kb on + strand, within SM_b20236 at 242.035 kb on + strand, within SM_b20236 at 242.049 kb on + strand at 242.182 kb on - strand at 242.221 kb on + strand at 242.221 kb on + strand at 242.222 kb on - strand at 242.241 kb on - strand at 242.383 kb on + strand at 242.384 kb on - strand at 242.474 kb on - strand at 242.755 kb on + strand, within SM_b20238 at 242.756 kb on - strand, within SM_b20238 at 242.869 kb on + strand, within SM_b20238 at 242.906 kb on + strand, within SM_b20238 at 242.906 kb on + strand, within SM_b20238 at 242.947 kb on - strand, within SM_b20238 at 242.983 kb on + strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 240,749 + SM_b20235 0.21 +0.4 240,769 + SM_b20235 0.23 +3.3 240,769 + SM_b20235 0.23 -1.4 240,769 + SM_b20235 0.23 +0.3 240,770 - SM_b20235 0.23 +0.1 240,770 - SM_b20235 0.23 +0.6 240,778 + SM_b20235 0.24 +0.5 241,081 - SM_b20235 0.51 -0.8 241,081 - SM_b20235 0.51 -0.1 241,081 - SM_b20235 0.51 -1.7 241,084 + SM_b20235 0.52 -4.1 241,084 + SM_b20235 0.52 -1.8 241,085 - SM_b20235 0.52 -0.4 241,085 - SM_b20235 0.52 -0.8 241,085 - +1.2 241,424 + SM_b20235 0.83 +0.6 241,425 - SM_b20235 0.83 +0.5 241,689 - -1.3 241,689 - +3.4 241,856 + SM_b20236 0.36 -2.1 241,929 - SM_b20236 0.57 -0.5 241,935 + SM_b20236 0.59 -1.5 242,018 - SM_b20236 0.83 -0.7 242,035 + SM_b20236 0.88 -1.0 242,035 + SM_b20236 0.88 -0.5 242,049 + +0.3 242,182 - -0.7 242,221 + +0.2 242,221 + +0.3 242,222 - -3.1 242,241 - -1.0 242,383 + +2.5 242,384 - -0.2 242,474 - +0.7 242,755 + SM_b20238 0.44 +1.2 242,756 - SM_b20238 0.44 +0.3 242,869 + SM_b20238 0.59 +0.9 242,906 + SM_b20238 0.63 -0.3 242,906 + SM_b20238 0.63 +0.2 242,947 - SM_b20238 0.68 -1.6 242,983 + SM_b20238 0.73 -0.3 242,984 - SM_b20238 0.73 +0.8 242,984 - SM_b20238 0.73 -1.0 242,984 - SM_b20238 0.73 +0.8 242,984 - SM_b20238 0.73 +0.4
Or see this region's nucleotide sequence