Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20155 and SM_b20156 overlap by 1 nucleotides SM_b20156 and SM_b20157 are separated by 41 nucleotides
SM_b20155: SM_b20155 - ABC transporter permease, at 172,249 to 174,099
_b20155
SM_b20156: SM_b20156 - ABC transporter ATP-binding protein, at 174,099 to 175,232
_b20156
SM_b20157: SM_b20157 - ABC transporter substrate-binding protein, at 175,274 to 176,398
_b20157
Position (kb) 174
175
176 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 173.157 kb on - strand, within SM_b20155 at 173.395 kb on + strand, within SM_b20155 at 173.507 kb on + strand, within SM_b20155 at 173.539 kb on + strand, within SM_b20155 at 173.605 kb on + strand, within SM_b20155 at 173.606 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.684 kb on - strand, within SM_b20155 at 173.915 kb on + strand at 173.915 kb on + strand at 173.915 kb on + strand at 173.959 kb on + strand at 173.960 kb on - strand at 173.980 kb on + strand at 173.981 kb on - strand at 174.035 kb on - strand at 174.136 kb on - strand at 174.136 kb on - strand at 174.136 kb on - strand at 174.372 kb on + strand, within SM_b20156 at 174.372 kb on + strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.658 kb on + strand, within SM_b20156 at 174.659 kb on - strand, within SM_b20156 at 174.662 kb on + strand, within SM_b20156 at 174.662 kb on + strand, within SM_b20156 at 174.663 kb on - strand, within SM_b20156 at 174.663 kb on - strand, within SM_b20156 at 174.666 kb on + strand, within SM_b20156 at 174.786 kb on + strand, within SM_b20156 at 174.786 kb on + strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.844 kb on + strand at 174.844 kb on + strand, within SM_b20156 at 174.844 kb on + strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.898 kb on - strand, within SM_b20156 at 174.966 kb on + strand, within SM_b20156 at 175.169 kb on - strand at 175.219 kb on + strand at 175.224 kb on + strand at 175.225 kb on - strand at 175.273 kb on + strand at 175.274 kb on - strand at 175.328 kb on + strand at 175.329 kb on - strand at 175.418 kb on + strand, within SM_b20157 at 175.419 kb on - strand, within SM_b20157 at 175.470 kb on - strand, within SM_b20157 at 175.712 kb on + strand, within SM_b20157 at 175.713 kb on - strand, within SM_b20157 at 175.717 kb on + strand, within SM_b20157 at 175.750 kb on + strand, within SM_b20157 at 175.751 kb on - strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.821 kb on - strand, within SM_b20157 at 175.821 kb on - strand, within SM_b20157 at 175.877 kb on + strand, within SM_b20157 at 175.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 173,157 - SM_b20155 0.49 +0.3 173,395 + SM_b20155 0.62 -0.4 173,507 + SM_b20155 0.68 -1.6 173,539 + SM_b20155 0.70 +1.3 173,605 + SM_b20155 0.73 -1.3 173,606 - SM_b20155 0.73 -2.3 173,639 - SM_b20155 0.75 -0.3 173,639 - SM_b20155 0.75 +1.1 173,639 - SM_b20155 0.75 -3.2 173,684 - SM_b20155 0.78 -2.2 173,915 + -0.2 173,915 + -0.4 173,915 + +1.8 173,959 + -0.9 173,960 - -1.8 173,980 + +0.6 173,981 - +0.2 174,035 - +0.8 174,136 - +0.5 174,136 - +1.5 174,136 - -1.6 174,372 + SM_b20156 0.24 -0.6 174,372 + SM_b20156 0.24 -0.9 174,373 - SM_b20156 0.24 +0.2 174,373 - SM_b20156 0.24 +0.2 174,373 - SM_b20156 0.24 +0.6 174,373 - SM_b20156 0.24 -1.1 174,373 - SM_b20156 0.24 -0.9 174,658 + SM_b20156 0.49 -1.1 174,659 - SM_b20156 0.49 +0.6 174,662 + SM_b20156 0.50 -0.1 174,662 + SM_b20156 0.50 -2.9 174,663 - SM_b20156 0.50 -0.5 174,663 - SM_b20156 0.50 +0.0 174,666 + SM_b20156 0.50 -2.3 174,786 + SM_b20156 0.61 +2.2 174,786 + SM_b20156 0.61 -3.6 174,787 - SM_b20156 0.61 -0.3 174,787 - SM_b20156 0.61 -0.1 174,787 - SM_b20156 0.61 -0.3 174,844 + -0.1 174,844 + SM_b20156 0.66 -3.0 174,844 + SM_b20156 0.66 +0.2 174,845 - SM_b20156 0.66 +0.5 174,845 - SM_b20156 0.66 -0.2 174,845 - SM_b20156 0.66 -0.7 174,845 - SM_b20156 0.66 +0.7 174,898 - SM_b20156 0.70 -0.4 174,966 + SM_b20156 0.76 +0.3 175,169 - +1.9 175,219 + +0.1 175,224 + -2.8 175,225 - -2.9 175,273 + -0.0 175,274 - +1.0 175,328 + -0.6 175,329 - +1.2 175,418 + SM_b20157 0.13 -0.6 175,419 - SM_b20157 0.13 -0.6 175,470 - SM_b20157 0.17 -0.1 175,712 + SM_b20157 0.39 -0.2 175,713 - SM_b20157 0.39 -2.6 175,717 + SM_b20157 0.39 -0.4 175,750 + SM_b20157 0.42 +0.7 175,751 - SM_b20157 0.42 +1.3 175,820 + SM_b20157 0.49 -0.1 175,820 + SM_b20157 0.49 -0.1 175,820 + SM_b20157 0.49 -2.8 175,820 + SM_b20157 0.49 -1.6 175,821 - SM_b20157 0.49 +0.7 175,821 - SM_b20157 0.49 -4.0 175,877 + SM_b20157 0.54 -0.0 175,889 + +2.2
Or see this region's nucleotide sequence