Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20152 and SM_b20153 are separated by 83 nucleotides SM_b20153 and SM_b20154 are separated by 50 nucleotides
SM_b20152: SM_b20152 - hypothetical protein, at 167,256 to 168,974
_b20152
SM_b20153: SM_b20153 - hypothetical protein, at 169,058 to 170,701
_b20153
SM_b20154: SM_b20154 - transcriptional regulator, at 170,752 to 171,738
_b20154
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 168.315 kb on - strand, within SM_b20152 at 168.442 kb on - strand, within SM_b20152 at 168.442 kb on - strand, within SM_b20152 at 168.501 kb on + strand, within SM_b20152 at 168.502 kb on - strand, within SM_b20152 at 168.738 kb on + strand, within SM_b20152 at 168.777 kb on - strand, within SM_b20152 at 168.801 kb on + strand, within SM_b20152 at 168.874 kb on + strand at 168.992 kb on + strand at 169.046 kb on + strand at 169.046 kb on + strand at 169.046 kb on + strand at 169.400 kb on - strand, within SM_b20153 at 169.838 kb on + strand, within SM_b20153 at 169.838 kb on + strand, within SM_b20153 at 169.839 kb on - strand, within SM_b20153 at 169.860 kb on + strand, within SM_b20153 at 169.860 kb on + strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 170.012 kb on + strand, within SM_b20153 at 170.012 kb on + strand, within SM_b20153 at 170.012 kb on + strand, within SM_b20153 at 170.159 kb on - strand, within SM_b20153 at 170.210 kb on + strand, within SM_b20153 at 170.210 kb on + strand, within SM_b20153 at 170.211 kb on - strand, within SM_b20153 at 170.211 kb on - strand, within SM_b20153 at 170.211 kb on - strand, within SM_b20153 at 170.236 kb on + strand, within SM_b20153 at 170.236 kb on + strand, within SM_b20153 at 170.274 kb on + strand, within SM_b20153 at 170.274 kb on + strand, within SM_b20153 at 170.275 kb on - strand, within SM_b20153 at 170.275 kb on - strand, within SM_b20153 at 170.279 kb on + strand, within SM_b20153 at 170.279 kb on + strand, within SM_b20153 at 170.280 kb on - strand, within SM_b20153 at 170.300 kb on - strand, within SM_b20153 at 170.395 kb on - strand, within SM_b20153 at 170.716 kb on - strand at 170.753 kb on + strand at 170.753 kb on + strand at 170.754 kb on - strand at 170.754 kb on - strand at 170.754 kb on - strand at 170.754 kb on - strand at 170.886 kb on - strand, within SM_b20154 at 171.071 kb on + strand, within SM_b20154 at 171.071 kb on + strand, within SM_b20154 at 171.270 kb on + strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.617 kb on - strand, within SM_b20154
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 168,315 - SM_b20152 0.62 -0.1 168,442 - SM_b20152 0.69 +0.8 168,442 - SM_b20152 0.69 +1.4 168,501 + SM_b20152 0.72 +2.5 168,502 - SM_b20152 0.72 -0.9 168,738 + SM_b20152 0.86 +0.4 168,777 - SM_b20152 0.88 -0.6 168,801 + SM_b20152 0.90 -0.3 168,874 + +0.8 168,992 + -1.9 169,046 + -1.7 169,046 + +0.4 169,046 + +1.2 169,400 - SM_b20153 0.21 -2.3 169,838 + SM_b20153 0.47 -2.7 169,838 + SM_b20153 0.47 -1.2 169,839 - SM_b20153 0.48 -0.3 169,860 + SM_b20153 0.49 -3.3 169,860 + SM_b20153 0.49 +0.6 169,861 - SM_b20153 0.49 +2.5 169,861 - SM_b20153 0.49 +2.1 169,861 - SM_b20153 0.49 -3.5 169,861 - SM_b20153 0.49 +1.7 170,012 + SM_b20153 0.58 -0.7 170,012 + SM_b20153 0.58 +0.7 170,012 + SM_b20153 0.58 -0.1 170,159 - SM_b20153 0.67 -1.1 170,210 + SM_b20153 0.70 -0.3 170,210 + SM_b20153 0.70 +3.2 170,211 - SM_b20153 0.70 -1.2 170,211 - SM_b20153 0.70 +0.1 170,211 - SM_b20153 0.70 +0.7 170,236 + SM_b20153 0.72 +0.5 170,236 + SM_b20153 0.72 +1.0 170,274 + SM_b20153 0.74 +0.8 170,274 + SM_b20153 0.74 +0.7 170,275 - SM_b20153 0.74 +1.8 170,275 - SM_b20153 0.74 +0.9 170,279 + SM_b20153 0.74 -0.6 170,279 + SM_b20153 0.74 -1.7 170,280 - SM_b20153 0.74 +0.7 170,300 - SM_b20153 0.76 +1.7 170,395 - SM_b20153 0.81 +0.1 170,716 - -1.0 170,753 + +1.0 170,753 + -2.3 170,754 - +0.2 170,754 - +1.7 170,754 - -0.5 170,754 - +0.9 170,886 - SM_b20154 0.14 -1.2 171,071 + SM_b20154 0.32 -1.8 171,071 + SM_b20154 0.32 +0.2 171,270 + SM_b20154 0.52 -0.6 171,416 - SM_b20154 0.67 +0.8 171,416 - SM_b20154 0.67 +0.4 171,616 + SM_b20154 0.88 -1.8 171,616 + SM_b20154 0.88 +0.0 171,616 + SM_b20154 0.88 +0.1 171,617 - SM_b20154 0.88 -1.5
Or see this region's nucleotide sequence