Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20082

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20080 and SM_b20081 are separated by 19 nucleotidesSM_b20081 and SM_b20082 overlap by 4 nucleotidesSM_b20082 and SM_b20083 are separated by 291 nucleotidesSM_b20083 and SM_b20084 are separated by 111 nucleotidesSM_b20084 and SM_b20085 are separated by 51 nucleotides SM_b20080: SM_b20080 - alcohol dehydrogenase, at 91,546 to 92,715 _b20080 SM_b20081: SM_b20081 - hypothetical protein, at 92,735 to 93,445 _b20081 SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260 _b20082 SM_b20083: SM_b20083 - hypothetical protein, at 94,552 to 94,791 _b20083 SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076 _b20084 SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274 _b20085 Position (kb) 93 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 92.499 kb on - strand, within SM_b20080at 92.563 kb on + strand, within SM_b20080at 92.563 kb on + strand, within SM_b20080at 92.659 kb on + strandat 92.829 kb on + strand, within SM_b20081at 92.830 kb on - strand, within SM_b20081at 93.089 kb on - strand, within SM_b20081at 93.089 kb on - strand, within SM_b20081at 93.089 kb on - strand, within SM_b20081at 93.379 kb on + strandat 93.382 kb on - strandat 93.382 kb on - strandat 93.382 kb on - strandat 93.404 kb on + strandat 93.404 kb on + strandat 93.404 kb on + strandat 93.404 kb on + strandat 93.405 kb on - strandat 93.454 kb on - strandat 93.542 kb on + strand, within SM_b20082at 93.543 kb on - strand, within SM_b20082at 93.713 kb on + strand, within SM_b20082at 93.713 kb on + strand, within SM_b20082at 94.002 kb on - strand, within SM_b20082at 94.379 kb on - strandat 94.447 kb on - strandat 94.551 kb on + strandat 94.551 kb on + strandat 94.551 kb on + strandat 94.551 kb on + strandat 94.552 kb on - strandat 94.552 kb on - strandat 94.552 kb on - strandat 94.714 kb on + strand, within SM_b20083at 94.714 kb on + strand, within SM_b20083at 94.714 kb on + strand, within SM_b20083at 94.715 kb on - strand, within SM_b20083at 94.829 kb on + strandat 94.830 kb on - strandat 94.856 kb on - strandat 94.904 kb on + strandat 94.904 kb on + strandat 94.957 kb on - strand, within SM_b20084at 94.957 kb on - strand, within SM_b20084at 94.957 kb on - strand, within SM_b20084at 94.957 kb on - strand, within SM_b20084at 94.970 kb on + strand, within SM_b20084at 94.979 kb on - strand, within SM_b20084at 95.036 kb on - strand, within SM_b20084at 95.046 kb on + strand, within SM_b20084at 95.046 kb on + strand, within SM_b20084at 95.046 kb on + strand, within SM_b20084at 95.058 kb on + strand, within SM_b20084at 95.076 kb on + strandat 95.077 kb on - strandat 95.260 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
92,499 - SM_b20080 0.81 +1.7
92,563 + SM_b20080 0.87 -3.1
92,563 + SM_b20080 0.87 -1.2
92,659 + -3.3
92,829 + SM_b20081 0.13 -1.2
92,830 - SM_b20081 0.13 -1.1
93,089 - SM_b20081 0.50 -0.7
93,089 - SM_b20081 0.50 +2.9
93,089 - SM_b20081 0.50 +1.9
93,379 + -0.1
93,382 - +1.0
93,382 - -0.5
93,382 - +1.9
93,404 + -1.4
93,404 + -0.0
93,404 + +1.6
93,404 + -0.5
93,405 - -0.0
93,454 - +3.3
93,542 + SM_b20082 0.12 +0.5
93,543 - SM_b20082 0.12 -0.4
93,713 + SM_b20082 0.33 +2.1
93,713 + SM_b20082 0.33 +2.3
94,002 - SM_b20082 0.68 +0.3
94,379 - -0.0
94,447 - +0.6
94,551 + +0.6
94,551 + +1.1
94,551 + +2.9
94,551 + -0.6
94,552 - +0.6
94,552 - -1.2
94,552 - +0.4
94,714 + SM_b20083 0.68 -1.3
94,714 + SM_b20083 0.68 -1.1
94,714 + SM_b20083 0.68 -0.3
94,715 - SM_b20083 0.68 +1.6
94,829 + -3.5
94,830 - -2.0
94,856 - +1.6
94,904 + -2.7
94,904 + -0.7
94,957 - SM_b20084 0.31 -0.1
94,957 - SM_b20084 0.31 -0.7
94,957 - SM_b20084 0.31 -0.8
94,957 - SM_b20084 0.31 -0.4
94,970 + SM_b20084 0.39 -0.7
94,979 - SM_b20084 0.44 +0.4
95,036 - SM_b20084 0.76 -3.3
95,046 + SM_b20084 0.82 +1.8
95,046 + SM_b20084 0.82 -1.9
95,046 + SM_b20084 0.82 +0.9
95,058 + SM_b20084 0.89 -0.3
95,076 + -1.4
95,077 - -0.2
95,260 + -0.6

Or see this region's nucleotide sequence