Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20079 and SM_b20080 are separated by 114 nucleotides SM_b20080 and SM_b20081 are separated by 19 nucleotides SM_b20081 and SM_b20082 overlap by 4 nucleotides
SM_b20079: SM_b20079 - hemolysin-adenlyate cyclase, at 88,213 to 91,431
_b20079
SM_b20080: SM_b20080 - alcohol dehydrogenase, at 91,546 to 92,715
_b20080
SM_b20081: SM_b20081 - hypothetical protein, at 92,735 to 93,445
_b20081
SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260
_b20082
Position (kb) 91
92
93 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 90.546 kb on + strand, within SM_b20079 at 90.547 kb on - strand, within SM_b20079 at 90.597 kb on + strand, within SM_b20079 at 90.597 kb on + strand, within SM_b20079 at 90.597 kb on + strand, within SM_b20079 at 90.598 kb on - strand, within SM_b20079 at 90.789 kb on + strand, within SM_b20079 at 90.789 kb on + strand, within SM_b20079 at 90.789 kb on + strand, within SM_b20079 at 90.790 kb on - strand, within SM_b20079 at 90.907 kb on + strand, within SM_b20079 at 90.955 kb on + strand, within SM_b20079 at 90.956 kb on - strand, within SM_b20079 at 90.956 kb on - strand, within SM_b20079 at 90.956 kb on - strand, within SM_b20079 at 90.957 kb on + strand, within SM_b20079 at 90.957 kb on + strand, within SM_b20079 at 90.958 kb on - strand, within SM_b20079 at 90.958 kb on - strand, within SM_b20079 at 91.252 kb on + strand at 91.253 kb on - strand at 91.253 kb on - strand at 91.303 kb on + strand at 91.327 kb on + strand at 91.327 kb on + strand at 91.328 kb on - strand at 91.331 kb on - strand at 91.674 kb on + strand, within SM_b20080 at 91.951 kb on - strand, within SM_b20080 at 91.951 kb on - strand, within SM_b20080 at 91.970 kb on - strand, within SM_b20080 at 92.251 kb on + strand, within SM_b20080 at 92.252 kb on - strand, within SM_b20080 at 92.252 kb on - strand, within SM_b20080 at 92.269 kb on + strand, within SM_b20080 at 92.269 kb on + strand, within SM_b20080 at 92.499 kb on - strand, within SM_b20080 at 92.563 kb on + strand, within SM_b20080 at 92.563 kb on + strand, within SM_b20080 at 92.659 kb on + strand at 92.829 kb on + strand, within SM_b20081 at 92.830 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.379 kb on + strand at 93.382 kb on - strand at 93.382 kb on - strand at 93.382 kb on - strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.405 kb on - strand at 93.454 kb on - strand at 93.542 kb on + strand, within SM_b20082 at 93.543 kb on - strand, within SM_b20082 at 93.713 kb on + strand, within SM_b20082 at 93.713 kb on + strand, within SM_b20082
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 90,546 + SM_b20079 0.72 -1.4 90,547 - SM_b20079 0.73 +1.2 90,597 + SM_b20079 0.74 -0.8 90,597 + SM_b20079 0.74 +2.0 90,597 + SM_b20079 0.74 -3.8 90,598 - SM_b20079 0.74 -2.5 90,789 + SM_b20079 0.80 +1.2 90,789 + SM_b20079 0.80 -0.8 90,789 + SM_b20079 0.80 +1.1 90,790 - SM_b20079 0.80 -1.5 90,907 + SM_b20079 0.84 -1.0 90,955 + SM_b20079 0.85 -0.3 90,956 - SM_b20079 0.85 +0.1 90,956 - SM_b20079 0.85 -1.2 90,956 - SM_b20079 0.85 +1.4 90,957 + SM_b20079 0.85 +0.4 90,957 + SM_b20079 0.85 -1.2 90,958 - SM_b20079 0.85 -0.9 90,958 - SM_b20079 0.85 -1.9 91,252 + -2.3 91,253 - +0.4 91,253 - -0.5 91,303 + -1.1 91,327 + -2.3 91,327 + +0.5 91,328 - +2.0 91,331 - -2.8 91,674 + SM_b20080 0.11 -1.1 91,951 - SM_b20080 0.35 -0.2 91,951 - SM_b20080 0.35 -2.3 91,970 - SM_b20080 0.36 +0.3 92,251 + SM_b20080 0.60 +0.6 92,252 - SM_b20080 0.60 -2.4 92,252 - SM_b20080 0.60 -3.3 92,269 + SM_b20080 0.62 +0.1 92,269 + SM_b20080 0.62 +1.1 92,499 - SM_b20080 0.81 +1.7 92,563 + SM_b20080 0.87 -3.1 92,563 + SM_b20080 0.87 -1.2 92,659 + -3.3 92,829 + SM_b20081 0.13 -1.2 92,830 - SM_b20081 0.13 -1.1 93,089 - SM_b20081 0.50 -0.7 93,089 - SM_b20081 0.50 +2.9 93,089 - SM_b20081 0.50 +1.9 93,379 + -0.1 93,382 - +1.0 93,382 - -0.5 93,382 - +1.9 93,404 + -1.4 93,404 + -0.0 93,404 + +1.6 93,404 + -0.5 93,405 - -0.0 93,454 - +3.3 93,542 + SM_b20082 0.12 +0.5 93,543 - SM_b20082 0.12 -0.4 93,713 + SM_b20082 0.33 +2.1 93,713 + SM_b20082 0.33 +2.3
Or see this region's nucleotide sequence