Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20069 and SM_b20070 are separated by 260 nucleotides SM_b20070 and SM_b20071 are separated by 217 nucleotides
SM_b20069: SM_b20069 - amino acid carrier protein, at 76,205 to 77,608
_b20069
SM_b20070: SM_b20070 - sulfate permease, at 77,869 to 79,356
_b20070
SM_b20071: SM_b20071 - efflux protein, at 79,574 to 80,767
_b20071
Position (kb) 77
78
79
80 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 77.264 kb on + strand, within SM_b20069 at 77.271 kb on + strand, within SM_b20069 at 77.271 kb on + strand, within SM_b20069 at 77.271 kb on + strand, within SM_b20069 at 77.321 kb on + strand, within SM_b20069 at 77.321 kb on + strand, within SM_b20069 at 77.322 kb on - strand, within SM_b20069 at 77.325 kb on - strand, within SM_b20069 at 77.325 kb on - strand, within SM_b20069 at 77.531 kb on + strand at 77.607 kb on - strand at 77.665 kb on + strand at 77.679 kb on + strand at 77.679 kb on + strand at 77.684 kb on - strand at 77.684 kb on - strand at 77.684 kb on - strand at 77.816 kb on - strand at 77.931 kb on + strand at 77.932 kb on - strand at 77.932 kb on - strand at 77.987 kb on + strand at 77.991 kb on + strand at 77.992 kb on - strand at 77.992 kb on - strand at 77.992 kb on - strand at 78.143 kb on + strand, within SM_b20070 at 78.143 kb on + strand, within SM_b20070 at 78.143 kb on + strand, within SM_b20070 at 78.144 kb on - strand, within SM_b20070 at 78.683 kb on + strand, within SM_b20070 at 78.683 kb on + strand, within SM_b20070 at 78.863 kb on + strand, within SM_b20070 at 78.864 kb on - strand, within SM_b20070 at 78.875 kb on + strand, within SM_b20070 at 78.876 kb on - strand, within SM_b20070 at 78.908 kb on + strand, within SM_b20070 at 78.909 kb on - strand, within SM_b20070 at 79.085 kb on + strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.265 kb on - strand at 79.332 kb on + strand at 79.332 kb on + strand at 79.335 kb on - strand at 79.335 kb on - strand at 79.374 kb on + strand at 79.375 kb on - strand at 79.495 kb on + strand at 79.495 kb on + strand at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.831 kb on - strand, within SM_b20071 at 80.034 kb on + strand, within SM_b20071 at 80.130 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 77,264 + SM_b20069 0.75 -1.4 77,271 + SM_b20069 0.76 -1.2 77,271 + SM_b20069 0.76 +0.8 77,271 + SM_b20069 0.76 -1.4 77,321 + SM_b20069 0.79 -1.8 77,321 + SM_b20069 0.79 -0.1 77,322 - SM_b20069 0.80 +1.2 77,325 - SM_b20069 0.80 +0.9 77,325 - SM_b20069 0.80 -1.6 77,531 + -1.5 77,607 - -1.1 77,665 + -0.3 77,679 + +0.2 77,679 + +0.3 77,684 - -1.4 77,684 - -0.5 77,684 - +6.3 77,816 - -0.1 77,931 + -0.7 77,932 - -2.2 77,932 - -0.4 77,987 + +0.8 77,991 + +0.9 77,992 - +0.3 77,992 - -0.1 77,992 - -1.9 78,143 + SM_b20070 0.18 -0.3 78,143 + SM_b20070 0.18 +1.6 78,143 + SM_b20070 0.18 -0.9 78,144 - SM_b20070 0.18 +2.3 78,683 + SM_b20070 0.55 +1.1 78,683 + SM_b20070 0.55 -1.6 78,863 + SM_b20070 0.67 +0.4 78,864 - SM_b20070 0.67 -0.3 78,875 + SM_b20070 0.68 +2.2 78,876 - SM_b20070 0.68 +0.3 78,908 + SM_b20070 0.70 -3.2 78,909 - SM_b20070 0.70 +2.3 79,085 + SM_b20070 0.82 -2.1 79,086 - SM_b20070 0.82 +0.7 79,086 - SM_b20070 0.82 -0.7 79,086 - SM_b20070 0.82 -1.2 79,086 - SM_b20070 0.82 -0.9 79,265 - +0.3 79,332 + +0.1 79,332 + -0.1 79,335 - -1.1 79,335 - -1.3 79,374 + +0.1 79,375 - -0.9 79,495 + -2.0 79,495 + -1.9 79,830 + SM_b20071 0.21 +3.0 79,830 + SM_b20071 0.21 -1.8 79,830 + SM_b20071 0.21 -0.8 79,830 + SM_b20071 0.21 -0.6 79,830 + SM_b20071 0.21 -0.6 79,831 - SM_b20071 0.22 +0.2 80,034 + SM_b20071 0.39 -0.5 80,130 + SM_b20071 0.47 +0.1 80,322 + SM_b20071 0.63 +0.1 80,322 + SM_b20071 0.63 +0.7 80,322 + SM_b20071 0.63 -2.3 80,322 + SM_b20071 0.63 -2.6 80,323 - SM_b20071 0.63 +0.9 80,323 - SM_b20071 0.63 -4.6 80,323 - SM_b20071 0.63 +0.7
Or see this region's nucleotide sequence