Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20066 and SM_b20067 are separated by 3 nucleotides SM_b20067 and SM_b20068 are separated by 214 nucleotides SM_b20068 and SM_b20069 are separated by 533 nucleotides
SM_b20066: SM_b20066 - hypothetical protein, at 74,537 to 74,722
_b20066
SM_b20067: SM_b20067 - hypothetical protein, at 74,726 to 75,247
_b20067
SM_b20068: SM_b20068 - hypothetical protein, at 75,462 to 75,671
_b20068
SM_b20069: SM_b20069 - amino acid carrier protein, at 76,205 to 77,608
_b20069
Position (kb) 75
76 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 74.611 kb on - strand at 74.832 kb on + strand, within SM_b20067 at 74.833 kb on - strand, within SM_b20067 at 74.833 kb on - strand, within SM_b20067 at 74.930 kb on - strand, within SM_b20067 at 75.088 kb on + strand, within SM_b20067 at 75.089 kb on - strand, within SM_b20067 at 75.119 kb on + strand, within SM_b20067 at 75.134 kb on - strand, within SM_b20067 at 75.134 kb on - strand, within SM_b20067 at 75.371 kb on + strand at 75.808 kb on + strand at 75.838 kb on + strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.839 kb on - strand at 75.924 kb on + strand at 75.924 kb on + strand at 75.940 kb on - strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.964 kb on + strand at 75.965 kb on - strand at 75.965 kb on - strand at 75.965 kb on - strand at 75.965 kb on - strand at 75.968 kb on + strand at 75.968 kb on + strand at 75.968 kb on + strand at 75.968 kb on + strand at 75.968 kb on + strand at 75.969 kb on - strand at 75.969 kb on - strand at 75.998 kb on + strand at 75.998 kb on + strand at 75.999 kb on - strand at 75.999 kb on - strand at 75.999 kb on - strand at 76.228 kb on + strand at 76.228 kb on + strand at 76.338 kb on - strand at 76.338 kb on - strand at 76.338 kb on - strand at 76.397 kb on - strand, within SM_b20069 at 76.472 kb on - strand, within SM_b20069 at 76.558 kb on - strand, within SM_b20069 at 76.610 kb on - strand, within SM_b20069
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 74,611 - -1.8 74,832 + SM_b20067 0.20 -2.0 74,833 - SM_b20067 0.20 -0.2 74,833 - SM_b20067 0.20 -0.5 74,930 - SM_b20067 0.39 -0.3 75,088 + SM_b20067 0.69 -3.9 75,089 - SM_b20067 0.70 +0.3 75,119 + SM_b20067 0.75 -0.5 75,134 - SM_b20067 0.78 -1.2 75,134 - SM_b20067 0.78 -0.7 75,371 + -0.3 75,808 + +0.7 75,838 + +0.7 75,839 - +1.5 75,839 - -0.7 75,839 - -0.4 75,839 - +0.0 75,839 - -3.8 75,839 - +0.9 75,839 - +0.2 75,924 + -3.3 75,924 + +0.5 75,940 - -0.2 75,964 + +0.1 75,964 + -0.7 75,964 + -0.1 75,964 + -1.9 75,964 + -0.5 75,964 + -0.4 75,964 + -0.7 75,965 - +0.5 75,965 - +1.1 75,965 - -1.3 75,965 - +0.6 75,968 + -2.3 75,968 + -1.3 75,968 + +0.1 75,968 + -0.8 75,968 + -0.7 75,969 - -0.5 75,969 - +2.6 75,998 + -3.2 75,998 + +1.8 75,999 - -0.5 75,999 - -1.9 75,999 - -0.6 76,228 + +1.9 76,228 + -0.9 76,338 - -0.2 76,338 - -3.6 76,338 - -0.3 76,397 - SM_b20069 0.14 -0.1 76,472 - SM_b20069 0.19 -1.3 76,558 - SM_b20069 0.25 +0.0 76,610 - SM_b20069 0.29 -2.6
Or see this region's nucleotide sequence