Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20033 and SM_b20034 are separated by 296 nucleotides SM_b20034 and SM_b20035 are separated by 10 nucleotides
SM_b20033: SM_b20033 - transcriptional regulator, at 43,775 to 44,437
_b20033
SM_b20034: SM_b20034 - ABC transporter, at 44,734 to 45,297
_b20034
SM_b20035: SM_b20035 - ABC transporter permease, at 45,308 to 46,588
_b20035
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 43.777 kb on - strand at 43.777 kb on - strand at 43.813 kb on - strand at 43.813 kb on - strand at 44.068 kb on + strand, within SM_b20033 at 44.068 kb on + strand, within SM_b20033 at 44.250 kb on + strand, within SM_b20033 at 44.277 kb on + strand, within SM_b20033 at 44.277 kb on + strand, within SM_b20033 at 44.280 kb on + strand, within SM_b20033 at 44.541 kb on + strand at 44.541 kb on + strand at 44.542 kb on - strand at 44.542 kb on - strand at 44.856 kb on - strand, within SM_b20034 at 45.016 kb on - strand, within SM_b20034 at 45.016 kb on - strand, within SM_b20034 at 45.022 kb on + strand, within SM_b20034 at 45.023 kb on - strand, within SM_b20034 at 45.023 kb on - strand, within SM_b20034 at 45.023 kb on - strand, within SM_b20034 at 45.315 kb on + strand at 45.315 kb on + strand at 45.407 kb on + strand at 45.408 kb on - strand at 45.408 kb on - strand at 45.518 kb on - strand, within SM_b20035 at 45.756 kb on + strand, within SM_b20035 at 45.756 kb on + strand, within SM_b20035 at 45.757 kb on - strand, within SM_b20035 at 45.831 kb on + strand, within SM_b20035 at 45.832 kb on - strand, within SM_b20035 at 45.832 kb on - strand, within SM_b20035 at 45.906 kb on + strand, within SM_b20035 at 46.047 kb on - strand, within SM_b20035 at 46.047 kb on - strand, within SM_b20035 at 46.047 kb on - strand, within SM_b20035 at 46.255 kb on + strand, within SM_b20035
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 43,777 - -3.6 43,777 - -1.1 43,813 - -0.7 43,813 - +1.3 44,068 + SM_b20033 0.44 -0.4 44,068 + SM_b20033 0.44 +0.6 44,250 + SM_b20033 0.72 -0.0 44,277 + SM_b20033 0.76 +1.9 44,277 + SM_b20033 0.76 +0.2 44,280 + SM_b20033 0.76 -0.5 44,541 + -0.4 44,541 + -0.4 44,542 - -0.9 44,542 - -1.9 44,856 - SM_b20034 0.22 -0.3 45,016 - SM_b20034 0.50 -1.2 45,016 - SM_b20034 0.50 -0.2 45,022 + SM_b20034 0.51 -0.7 45,023 - SM_b20034 0.51 -2.0 45,023 - SM_b20034 0.51 +0.0 45,023 - SM_b20034 0.51 -0.5 45,315 + -0.6 45,315 + +0.7 45,407 + +1.1 45,408 - +0.5 45,408 - +0.2 45,518 - SM_b20035 0.16 +0.3 45,756 + SM_b20035 0.35 +0.2 45,756 + SM_b20035 0.35 +0.5 45,757 - SM_b20035 0.35 -3.6 45,831 + SM_b20035 0.41 -3.7 45,832 - SM_b20035 0.41 -1.2 45,832 - SM_b20035 0.41 -0.2 45,906 + SM_b20035 0.47 -0.2 46,047 - SM_b20035 0.58 -1.5 46,047 - SM_b20035 0.58 -2.5 46,047 - SM_b20035 0.58 +0.2 46,255 + SM_b20035 0.74 -1.4
Or see this region's nucleotide sequence