Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20011

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20010 and SM_b20011 are separated by 226 nucleotidesSM_b20011 and SM_b20012 are separated by 31 nucleotides SM_b20010: SM_b20010 - hypothetical protein, at 14,375 to 15,442 _b20010 SM_b20011: SM_b20011 - hypothetical protein, at 15,669 to 16,448 _b20011 SM_b20012: SM_b20012 - hypothetical protein, at 16,480 to 19,023 _b20012 Position (kb) 15 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 14.676 kb on - strand, within SM_b20010at 14.734 kb on + strand, within SM_b20010at 14.735 kb on - strand, within SM_b20010at 15.441 kb on - strandat 15.470 kb on + strandat 15.470 kb on + strandat 15.470 kb on + strandat 15.675 kb on - strandat 15.906 kb on + strand, within SM_b20011at 15.907 kb on - strand, within SM_b20011at 15.907 kb on - strand, within SM_b20011at 15.908 kb on + strand, within SM_b20011at 15.908 kb on + strand, within SM_b20011at 15.909 kb on - strand, within SM_b20011at 16.301 kb on + strand, within SM_b20011at 16.508 kb on + strandat 16.957 kb on + strand, within SM_b20012at 16.957 kb on + strand, within SM_b20012at 16.958 kb on - strand, within SM_b20012at 16.970 kb on + strand, within SM_b20012at 17.004 kb on - strand, within SM_b20012at 17.204 kb on + strand, within SM_b20012at 17.205 kb on - strand, within SM_b20012at 17.432 kb on + strand, within SM_b20012at 17.433 kb on - strand, within SM_b20012at 17.433 kb on - strand, within SM_b20012

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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14,676 - SM_b20010 0.28 -0.2
14,734 + SM_b20010 0.34 +0.7
14,735 - SM_b20010 0.34 +0.7
15,441 - +0.2
15,470 + -0.0
15,470 + +2.1
15,470 + +0.5
15,675 - +2.3
15,906 + SM_b20011 0.30 -0.1
15,907 - SM_b20011 0.31 -2.6
15,907 - SM_b20011 0.31 +0.6
15,908 + SM_b20011 0.31 -0.2
15,908 + SM_b20011 0.31 -0.9
15,909 - SM_b20011 0.31 +0.3
16,301 + SM_b20011 0.81 -3.0
16,508 + -0.8
16,957 + SM_b20012 0.19 -0.3
16,957 + SM_b20012 0.19 -0.5
16,958 - SM_b20012 0.19 +0.3
16,970 + SM_b20012 0.19 -0.3
17,004 - SM_b20012 0.21 +1.5
17,204 + SM_b20012 0.28 +1.9
17,205 - SM_b20012 0.28 -0.5
17,432 + SM_b20012 0.37 -1.2
17,433 - SM_b20012 0.37 -2.2
17,433 - SM_b20012 0.37 -0.3

Or see this region's nucleotide sequence