Experiment: Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3572 and Pf6N2E2_3573 are separated by 31 nucleotides Pf6N2E2_3573 and Pf6N2E2_3574 are separated by 184 nucleotides Pf6N2E2_3574 and Pf6N2E2_3575 are separated by 138 nucleotides
Pf6N2E2_3572 - Urease accessory protein UreG, at 4,162,800 to 4,163,414
_3572
Pf6N2E2_3573 - HupE-UreJ family metal transporter, at 4,163,446 to 4,164,018
_3573
Pf6N2E2_3574 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 4,164,203 to 4,165,336
_3574
Pf6N2E2_3575 - Oxidoreductase, short chain dehydrogenase/reductase family, at 4,165,475 to 4,166,239
_3575
Position (kb)
4164
4165
4166 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4163.246 kb on + strand, within Pf6N2E2_3572 at 4163.247 kb on - strand, within Pf6N2E2_3572 at 4163.333 kb on - strand, within Pf6N2E2_3572 at 4163.441 kb on + strand at 4163.658 kb on + strand, within Pf6N2E2_3573 at 4163.659 kb on - strand, within Pf6N2E2_3573 at 4163.659 kb on - strand, within Pf6N2E2_3573 at 4163.659 kb on - strand, within Pf6N2E2_3573 at 4163.872 kb on + strand, within Pf6N2E2_3573 at 4164.089 kb on + strand at 4164.089 kb on + strand at 4164.089 kb on + strand at 4164.090 kb on - strand at 4164.090 kb on - strand at 4164.090 kb on - strand at 4164.090 kb on - strand at 4164.160 kb on + strand at 4164.161 kb on - strand at 4164.161 kb on - strand at 4164.161 kb on - strand at 4164.161 kb on - strand at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.410 kb on + strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.411 kb on - strand, within Pf6N2E2_3574 at 4164.521 kb on + strand, within Pf6N2E2_3574 at 4164.521 kb on + strand, within Pf6N2E2_3574 at 4164.521 kb on + strand, within Pf6N2E2_3574 at 4164.522 kb on - strand, within Pf6N2E2_3574 at 4164.569 kb on + strand, within Pf6N2E2_3574 at 4164.569 kb on + strand, within Pf6N2E2_3574 at 4164.570 kb on - strand, within Pf6N2E2_3574 at 4164.570 kb on - strand, within Pf6N2E2_3574 at 4164.570 kb on - strand, within Pf6N2E2_3574 at 4164.570 kb on - strand, within Pf6N2E2_3574 at 4164.570 kb on - strand, within Pf6N2E2_3574 at 4164.583 kb on + strand, within Pf6N2E2_3574 at 4164.698 kb on + strand, within Pf6N2E2_3574 at 4164.699 kb on - strand, within Pf6N2E2_3574 at 4164.712 kb on - strand, within Pf6N2E2_3574 at 4164.913 kb on + strand, within Pf6N2E2_3574 at 4164.947 kb on + strand, within Pf6N2E2_3574 at 4164.948 kb on - strand, within Pf6N2E2_3574 at 4165.133 kb on + strand, within Pf6N2E2_3574 at 4165.133 kb on + strand, within Pf6N2E2_3574 at 4165.134 kb on - strand, within Pf6N2E2_3574 at 4165.282 kb on + strand at 4165.334 kb on + strand at 4165.334 kb on + strand at 4165.364 kb on - strand at 4165.552 kb on + strand, within Pf6N2E2_3575 at 4165.552 kb on + strand, within Pf6N2E2_3575 at 4165.627 kb on - strand, within Pf6N2E2_3575 at 4165.638 kb on + strand, within Pf6N2E2_3575 at 4165.702 kb on + strand, within Pf6N2E2_3575 at 4165.785 kb on + strand, within Pf6N2E2_3575 at 4165.785 kb on + strand, within Pf6N2E2_3575 at 4165.786 kb on - strand, within Pf6N2E2_3575 at 4165.786 kb on - strand, within Pf6N2E2_3575 at 4165.786 kb on - strand, within Pf6N2E2_3575 at 4165.786 kb on - strand, within Pf6N2E2_3575 at 4165.810 kb on - strand, within Pf6N2E2_3575 at 4165.889 kb on - strand, within Pf6N2E2_3575 at 4165.893 kb on + strand, within Pf6N2E2_3575 at 4165.893 kb on + strand, within Pf6N2E2_3575 at 4165.893 kb on + strand, within Pf6N2E2_3575 at 4165.893 kb on + strand, within Pf6N2E2_3575 at 4165.893 kb on + strand, within Pf6N2E2_3575 at 4165.893 kb on + strand, within Pf6N2E2_3575 at 4165.893 kb on + strand, within Pf6N2E2_3575 at 4165.893 kb on + strand, within Pf6N2E2_3575 at 4165.894 kb on - strand, within Pf6N2E2_3575 at 4165.894 kb on - strand, within Pf6N2E2_3575 at 4165.894 kb on - strand, within Pf6N2E2_3575 at 4165.894 kb on - strand, within Pf6N2E2_3575 at 4165.894 kb on - strand, within Pf6N2E2_3575 at 4166.222 kb on - strand at 4166.222 kb on - strand at 4166.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM remove 4,163,246 + Pf6N2E2_3572 0.73 -1.1 4,163,247 - Pf6N2E2_3572 0.73 +0.0 4,163,333 - Pf6N2E2_3572 0.87 +1.1 4,163,441 + -0.6 4,163,658 + Pf6N2E2_3573 0.37 -0.2 4,163,659 - Pf6N2E2_3573 0.37 +1.0 4,163,659 - Pf6N2E2_3573 0.37 +0.1 4,163,659 - Pf6N2E2_3573 0.37 +0.8 4,163,872 + Pf6N2E2_3573 0.74 +0.4 4,164,089 + -0.4 4,164,089 + -0.8 4,164,089 + -0.0 4,164,090 - -0.5 4,164,090 - -0.2 4,164,090 - +0.6 4,164,090 - -1.1 4,164,160 + -0.0 4,164,161 - -0.5 4,164,161 - +0.2 4,164,161 - +0.9 4,164,161 - +0.1 4,164,410 + Pf6N2E2_3574 0.18 -0.9 4,164,410 + Pf6N2E2_3574 0.18 -1.0 4,164,410 + Pf6N2E2_3574 0.18 -2.6 4,164,410 + Pf6N2E2_3574 0.18 -1.4 4,164,410 + Pf6N2E2_3574 0.18 -1.5 4,164,410 + Pf6N2E2_3574 0.18 -2.3 4,164,410 + Pf6N2E2_3574 0.18 -0.5 4,164,410 + Pf6N2E2_3574 0.18 -2.1 4,164,410 + Pf6N2E2_3574 0.18 -2.2 4,164,410 + Pf6N2E2_3574 0.18 +0.5 4,164,410 + Pf6N2E2_3574 0.18 -1.3 4,164,410 + Pf6N2E2_3574 0.18 -1.0 4,164,410 + Pf6N2E2_3574 0.18 -1.7 4,164,410 + Pf6N2E2_3574 0.18 -2.8 4,164,410 + Pf6N2E2_3574 0.18 +0.8 4,164,410 + Pf6N2E2_3574 0.18 -2.9 4,164,410 + Pf6N2E2_3574 0.18 -2.4 4,164,410 + Pf6N2E2_3574 0.18 -1.8 4,164,410 + Pf6N2E2_3574 0.18 +0.2 4,164,411 - Pf6N2E2_3574 0.18 -0.2 4,164,411 - Pf6N2E2_3574 0.18 +0.8 4,164,411 - Pf6N2E2_3574 0.18 -1.2 4,164,411 - Pf6N2E2_3574 0.18 -2.9 4,164,411 - Pf6N2E2_3574 0.18 -1.4 4,164,411 - Pf6N2E2_3574 0.18 -1.3 4,164,411 - Pf6N2E2_3574 0.18 +0.2 4,164,411 - Pf6N2E2_3574 0.18 -0.7 4,164,411 - Pf6N2E2_3574 0.18 -1.2 4,164,411 - Pf6N2E2_3574 0.18 -2.3 4,164,411 - Pf6N2E2_3574 0.18 -0.8 4,164,411 - Pf6N2E2_3574 0.18 -1.4 4,164,411 - Pf6N2E2_3574 0.18 -3.5 4,164,411 - Pf6N2E2_3574 0.18 -2.3 4,164,411 - Pf6N2E2_3574 0.18 -2.7 4,164,411 - Pf6N2E2_3574 0.18 -1.2 4,164,411 - Pf6N2E2_3574 0.18 -2.9 4,164,411 - Pf6N2E2_3574 0.18 -1.9 4,164,521 + Pf6N2E2_3574 0.28 -1.6 4,164,521 + Pf6N2E2_3574 0.28 -0.8 4,164,521 + Pf6N2E2_3574 0.28 +1.2 4,164,522 - Pf6N2E2_3574 0.28 +0.3 4,164,569 + Pf6N2E2_3574 0.32 -0.6 4,164,569 + Pf6N2E2_3574 0.32 -0.2 4,164,570 - Pf6N2E2_3574 0.32 -2.1 4,164,570 - Pf6N2E2_3574 0.32 -0.3 4,164,570 - Pf6N2E2_3574 0.32 -0.8 4,164,570 - Pf6N2E2_3574 0.32 -1.8 4,164,570 - Pf6N2E2_3574 0.32 -0.1 4,164,583 + Pf6N2E2_3574 0.34 -0.7 4,164,698 + Pf6N2E2_3574 0.44 -2.0 4,164,699 - Pf6N2E2_3574 0.44 -1.5 4,164,712 - Pf6N2E2_3574 0.45 -1.1 4,164,913 + Pf6N2E2_3574 0.63 -0.8 4,164,947 + Pf6N2E2_3574 0.66 +0.6 4,164,948 - Pf6N2E2_3574 0.66 -0.8 4,165,133 + Pf6N2E2_3574 0.82 -0.6 4,165,133 + Pf6N2E2_3574 0.82 -1.6 4,165,134 - Pf6N2E2_3574 0.82 -0.9 4,165,282 + -0.6 4,165,334 + -1.1 4,165,334 + -1.1 4,165,364 - -0.2 4,165,552 + Pf6N2E2_3575 0.10 -0.0 4,165,552 + Pf6N2E2_3575 0.10 +0.5 4,165,627 - Pf6N2E2_3575 0.20 -0.8 4,165,638 + Pf6N2E2_3575 0.21 +0.0 4,165,702 + Pf6N2E2_3575 0.30 -1.1 4,165,785 + Pf6N2E2_3575 0.41 +0.1 4,165,785 + Pf6N2E2_3575 0.41 -1.0 4,165,786 - Pf6N2E2_3575 0.41 -2.3 4,165,786 - Pf6N2E2_3575 0.41 +0.4 4,165,786 - Pf6N2E2_3575 0.41 -0.2 4,165,786 - Pf6N2E2_3575 0.41 +0.0 4,165,810 - Pf6N2E2_3575 0.44 +1.0 4,165,889 - Pf6N2E2_3575 0.54 +0.7 4,165,893 + Pf6N2E2_3575 0.55 +0.1 4,165,893 + Pf6N2E2_3575 0.55 +1.2 4,165,893 + Pf6N2E2_3575 0.55 -0.9 4,165,893 + Pf6N2E2_3575 0.55 +0.2 4,165,893 + Pf6N2E2_3575 0.55 +1.0 4,165,893 + Pf6N2E2_3575 0.55 +0.6 4,165,893 + Pf6N2E2_3575 0.55 +0.8 4,165,893 + Pf6N2E2_3575 0.55 +2.5 4,165,894 - Pf6N2E2_3575 0.55 +0.6 4,165,894 - Pf6N2E2_3575 0.55 -0.2 4,165,894 - Pf6N2E2_3575 0.55 +0.9 4,165,894 - Pf6N2E2_3575 0.55 +0.8 4,165,894 - Pf6N2E2_3575 0.55 -1.1 4,166,222 - -0.2 4,166,222 - +0.2 4,166,222 - +0.2
Or see this region's nucleotide sequence