Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_830 and Pf6N2E2_831 are separated by 57 nucleotides Pf6N2E2_831 and Pf6N2E2_832 are separated by 48 nucleotides
Pf6N2E2_830 - Long-chain fatty acid transport protein, at 968,049 to 969,320
_830
Pf6N2E2_831 - Ketoacyl reductase hetN (EC 1.3.1.-), at 969,378 to 970,163
_831
Pf6N2E2_832 - Outer membrane component of tripartite multidrug resistance system, at 970,212 to 971,675
_832
Position (kb) 969
970
971 Strain fitness (log2 ratio) -1
0
1
2
3 at 968.412 kb on + strand, within Pf6N2E2_830 at 968.413 kb on - strand, within Pf6N2E2_830 at 968.466 kb on + strand, within Pf6N2E2_830 at 968.517 kb on + strand, within Pf6N2E2_830 at 968.517 kb on + strand, within Pf6N2E2_830 at 968.518 kb on - strand, within Pf6N2E2_830 at 968.518 kb on - strand, within Pf6N2E2_830 at 968.518 kb on - strand, within Pf6N2E2_830 at 968.718 kb on + strand, within Pf6N2E2_830 at 968.718 kb on + strand, within Pf6N2E2_830 at 968.718 kb on + strand, within Pf6N2E2_830 at 968.736 kb on + strand, within Pf6N2E2_830 at 968.737 kb on - strand, within Pf6N2E2_830 at 968.737 kb on - strand, within Pf6N2E2_830 at 968.805 kb on + strand, within Pf6N2E2_830 at 968.806 kb on - strand, within Pf6N2E2_830 at 968.806 kb on - strand, within Pf6N2E2_830 at 968.886 kb on + strand, within Pf6N2E2_830 at 968.886 kb on + strand, within Pf6N2E2_830 at 968.887 kb on - strand, within Pf6N2E2_830 at 968.887 kb on - strand, within Pf6N2E2_830 at 968.898 kb on - strand, within Pf6N2E2_830 at 969.037 kb on - strand, within Pf6N2E2_830 at 969.037 kb on - strand, within Pf6N2E2_830 at 969.038 kb on + strand, within Pf6N2E2_830 at 969.198 kb on + strand at 969.204 kb on + strand at 969.204 kb on + strand at 969.204 kb on + strand at 969.204 kb on + strand at 969.205 kb on - strand at 969.205 kb on - strand at 969.258 kb on + strand at 969.258 kb on + strand at 969.258 kb on + strand at 969.258 kb on + strand at 969.258 kb on + strand at 969.259 kb on - strand at 969.259 kb on - strand at 969.296 kb on + strand at 969.297 kb on - strand at 969.680 kb on - strand, within Pf6N2E2_831 at 969.697 kb on + strand, within Pf6N2E2_831 at 969.697 kb on + strand, within Pf6N2E2_831 at 969.698 kb on - strand, within Pf6N2E2_831 at 969.725 kb on - strand, within Pf6N2E2_831 at 970.087 kb on + strand at 970.195 kb on + strand at 970.196 kb on - strand at 970.391 kb on - strand, within Pf6N2E2_832 at 970.437 kb on + strand, within Pf6N2E2_832 at 970.717 kb on + strand, within Pf6N2E2_832 at 970.717 kb on + strand, within Pf6N2E2_832 at 970.718 kb on - strand, within Pf6N2E2_832 at 970.800 kb on + strand, within Pf6N2E2_832 at 970.801 kb on - strand, within Pf6N2E2_832 at 970.814 kb on + strand, within Pf6N2E2_832 at 970.999 kb on + strand, within Pf6N2E2_832 at 970.999 kb on + strand, within Pf6N2E2_832 at 970.999 kb on + strand, within Pf6N2E2_832 at 971.024 kb on - strand, within Pf6N2E2_832 at 971.082 kb on - strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 968,412 + Pf6N2E2_830 0.29 +0.0 968,413 - Pf6N2E2_830 0.29 +0.6 968,466 + Pf6N2E2_830 0.33 +0.9 968,517 + Pf6N2E2_830 0.37 +3.2 968,517 + Pf6N2E2_830 0.37 -0.7 968,518 - Pf6N2E2_830 0.37 +0.9 968,518 - Pf6N2E2_830 0.37 +0.0 968,518 - Pf6N2E2_830 0.37 -1.4 968,718 + Pf6N2E2_830 0.53 +0.6 968,718 + Pf6N2E2_830 0.53 +1.3 968,718 + Pf6N2E2_830 0.53 -0.0 968,736 + Pf6N2E2_830 0.54 +1.3 968,737 - Pf6N2E2_830 0.54 -0.0 968,737 - Pf6N2E2_830 0.54 -0.7 968,805 + Pf6N2E2_830 0.59 +0.4 968,806 - Pf6N2E2_830 0.60 +0.6 968,806 - Pf6N2E2_830 0.60 +1.2 968,886 + Pf6N2E2_830 0.66 +1.0 968,886 + Pf6N2E2_830 0.66 +0.9 968,887 - Pf6N2E2_830 0.66 +1.2 968,887 - Pf6N2E2_830 0.66 -1.0 968,898 - Pf6N2E2_830 0.67 +0.6 969,037 - Pf6N2E2_830 0.78 +0.9 969,037 - Pf6N2E2_830 0.78 +0.0 969,038 + Pf6N2E2_830 0.78 -0.6 969,198 + -0.3 969,204 + +0.4 969,204 + +1.2 969,204 + +1.9 969,204 + +0.0 969,205 - +0.2 969,205 - -0.8 969,258 + -0.4 969,258 + +1.1 969,258 + -0.5 969,258 + -0.4 969,258 + +0.6 969,259 - +1.3 969,259 - +0.8 969,296 + -0.2 969,297 - -0.7 969,680 - Pf6N2E2_831 0.38 -0.2 969,697 + Pf6N2E2_831 0.41 +0.6 969,697 + Pf6N2E2_831 0.41 -1.1 969,698 - Pf6N2E2_831 0.41 -0.4 969,725 - Pf6N2E2_831 0.44 -1.0 970,087 + +1.8 970,195 + -0.4 970,196 - -0.1 970,391 - Pf6N2E2_832 0.12 -0.1 970,437 + Pf6N2E2_832 0.15 -0.6 970,717 + Pf6N2E2_832 0.34 +0.6 970,717 + Pf6N2E2_832 0.34 -0.1 970,718 - Pf6N2E2_832 0.35 +0.4 970,800 + Pf6N2E2_832 0.40 +0.2 970,801 - Pf6N2E2_832 0.40 +0.6 970,814 + Pf6N2E2_832 0.41 +0.0 970,999 + Pf6N2E2_832 0.54 +0.4 970,999 + Pf6N2E2_832 0.54 -1.7 970,999 + Pf6N2E2_832 0.54 -0.7 971,024 - Pf6N2E2_832 0.55 -0.4 971,082 - Pf6N2E2_832 0.59 +0.4 971,116 + Pf6N2E2_832 0.62 +0.9 971,116 + Pf6N2E2_832 0.62 +0.4 971,116 + Pf6N2E2_832 0.62 -1.1 971,116 + Pf6N2E2_832 0.62 -0.4 971,116 + Pf6N2E2_832 0.62 -1.0 971,116 + Pf6N2E2_832 0.62 +0.6 971,116 + Pf6N2E2_832 0.62 -1.7 971,116 + Pf6N2E2_832 0.62 +0.0 971,116 + Pf6N2E2_832 0.62 +0.4 971,117 - Pf6N2E2_832 0.62 -0.3 971,117 - Pf6N2E2_832 0.62 -0.1 971,117 - Pf6N2E2_832 0.62 +0.9 971,117 - Pf6N2E2_832 0.62 +0.2 971,117 - Pf6N2E2_832 0.62 +0.9 971,117 - Pf6N2E2_832 0.62 -0.4 971,117 - Pf6N2E2_832 0.62 -0.1 971,117 - Pf6N2E2_832 0.62 +0.9 971,117 - Pf6N2E2_832 0.62 +0.6 971,117 - Pf6N2E2_832 0.62 +1.4
Or see this region's nucleotide sequence