Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_744 and Pf6N2E2_745 are separated by 164 nucleotides Pf6N2E2_745 and Pf6N2E2_746 are separated by 160 nucleotides Pf6N2E2_746 and Pf6N2E2_747 are separated by 3 nucleotides Pf6N2E2_747 and Pf6N2E2_748 are separated by 95 nucleotides
Pf6N2E2_744 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 854,309 to 856,186
_744
Pf6N2E2_745 - Probable transmembrane protein, at 856,351 to 856,668
_745
Pf6N2E2_746 - FIG00958097: hypothetical protein, at 856,829 to 857,083
_746
Pf6N2E2_747 - Transcriptional regulator in custer with plant-induced nitrilase, at 857,087 to 857,986
_747
Pf6N2E2_748 - Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine, at 858,082 to 859,005
_748
Position (kb)
856
857
858 Strain fitness (log2 ratio)
-1
0
1 at 856.184 kb on + strand at 856.184 kb on + strand at 856.270 kb on + strand at 856.271 kb on - strand at 856.363 kb on + strand at 856.364 kb on - strand at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.659 kb on + strand at 856.674 kb on + strand at 856.674 kb on + strand at 856.674 kb on + strand at 856.675 kb on - strand at 856.794 kb on + strand at 856.794 kb on + strand at 856.794 kb on + strand at 856.794 kb on + strand at 856.795 kb on - strand at 856.795 kb on - strand at 856.795 kb on - strand at 856.795 kb on - strand at 856.811 kb on - strand at 856.811 kb on - strand at 856.822 kb on - strand at 857.031 kb on - strand, within Pf6N2E2_746 at 857.043 kb on + strand, within Pf6N2E2_746 at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.082 kb on - strand at 857.082 kb on - strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.089 kb on - strand at 857.089 kb on - strand at 857.123 kb on + strand at 857.123 kb on + strand at 857.476 kb on - strand, within Pf6N2E2_747 at 857.707 kb on - strand, within Pf6N2E2_747 at 857.752 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.832 kb on - strand, within Pf6N2E2_747 at 857.832 kb on - strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.845 kb on - strand, within Pf6N2E2_747 at 857.980 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 856,184 + -0.9 856,184 + +0.9 856,270 + -1.0 856,271 - +0.6 856,363 + -0.6 856,364 - -0.5 856,433 + Pf6N2E2_745 0.26 -1.4 856,433 + Pf6N2E2_745 0.26 -0.1 856,433 + Pf6N2E2_745 0.26 -0.1 856,433 + Pf6N2E2_745 0.26 +0.6 856,433 + Pf6N2E2_745 0.26 +0.2 856,433 + Pf6N2E2_745 0.26 +0.3 856,433 + Pf6N2E2_745 0.26 +0.3 856,433 + Pf6N2E2_745 0.26 +0.0 856,434 - Pf6N2E2_745 0.26 +0.4 856,434 - Pf6N2E2_745 0.26 -0.4 856,434 - Pf6N2E2_745 0.26 +0.3 856,434 - Pf6N2E2_745 0.26 +0.6 856,659 + +1.7 856,674 + +0.3 856,674 + +1.0 856,674 + +1.0 856,675 - -0.4 856,794 + +0.9 856,794 + -0.1 856,794 + +1.0 856,794 + +0.1 856,795 - +0.4 856,795 - -0.3 856,795 - -1.6 856,795 - -0.1 856,811 - -1.0 856,811 - -1.0 856,822 - -0.2 857,031 - Pf6N2E2_746 0.79 -1.7 857,043 + Pf6N2E2_746 0.84 +0.2 857,081 + -0.2 857,081 + -0.7 857,081 + -0.7 857,081 + +0.2 857,081 + -0.4 857,081 + -1.1 857,082 - -1.2 857,082 - +0.2 857,088 + +0.1 857,088 + +0.0 857,088 + +0.5 857,089 - +1.0 857,089 - -0.4 857,123 + -0.4 857,123 + -0.1 857,476 - Pf6N2E2_747 0.43 +0.6 857,707 - Pf6N2E2_747 0.69 +1.7 857,752 + Pf6N2E2_747 0.74 +0.8 857,831 + Pf6N2E2_747 0.83 +1.2 857,831 + Pf6N2E2_747 0.83 +1.0 857,831 + Pf6N2E2_747 0.83 -0.7 857,831 + Pf6N2E2_747 0.83 -0.4 857,832 - Pf6N2E2_747 0.83 -0.4 857,832 - Pf6N2E2_747 0.83 +0.9 857,844 + Pf6N2E2_747 0.84 +0.3 857,844 + Pf6N2E2_747 0.84 -0.4 857,844 + Pf6N2E2_747 0.84 +0.6 857,845 - Pf6N2E2_747 0.84 +0.3 857,980 + +0.6
Or see this region's nucleotide sequence