Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_746

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_744 and Pf6N2E2_745 are separated by 164 nucleotidesPf6N2E2_745 and Pf6N2E2_746 are separated by 160 nucleotidesPf6N2E2_746 and Pf6N2E2_747 are separated by 3 nucleotidesPf6N2E2_747 and Pf6N2E2_748 are separated by 95 nucleotides Pf6N2E2_744 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 854,309 to 856,186 _744 Pf6N2E2_745 - Probable transmembrane protein, at 856,351 to 856,668 _745 Pf6N2E2_746 - FIG00958097: hypothetical protein, at 856,829 to 857,083 _746 Pf6N2E2_747 - Transcriptional regulator in custer with plant-induced nitrilase, at 857,087 to 857,986 _747 Pf6N2E2_748 - Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine, at 858,082 to 859,005 _748 Position (kb) 856 857 858Strain fitness (log2 ratio) -1 0 1at 856.184 kb on + strandat 856.184 kb on + strandat 856.270 kb on + strandat 856.271 kb on - strandat 856.363 kb on + strandat 856.364 kb on - strandat 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.659 kb on + strandat 856.674 kb on + strandat 856.674 kb on + strandat 856.674 kb on + strandat 856.675 kb on - strandat 856.794 kb on + strandat 856.794 kb on + strandat 856.794 kb on + strandat 856.794 kb on + strandat 856.795 kb on - strandat 856.795 kb on - strandat 856.795 kb on - strandat 856.795 kb on - strandat 856.811 kb on - strandat 856.811 kb on - strandat 856.822 kb on - strandat 857.031 kb on - strand, within Pf6N2E2_746at 857.043 kb on + strand, within Pf6N2E2_746at 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.082 kb on - strandat 857.082 kb on - strandat 857.088 kb on + strandat 857.088 kb on + strandat 857.088 kb on + strandat 857.089 kb on - strandat 857.089 kb on - strandat 857.123 kb on + strandat 857.123 kb on + strandat 857.476 kb on - strand, within Pf6N2E2_747at 857.707 kb on - strand, within Pf6N2E2_747at 857.752 kb on + strand, within Pf6N2E2_747at 857.831 kb on + strand, within Pf6N2E2_747at 857.831 kb on + strand, within Pf6N2E2_747at 857.831 kb on + strand, within Pf6N2E2_747at 857.831 kb on + strand, within Pf6N2E2_747at 857.832 kb on - strand, within Pf6N2E2_747at 857.832 kb on - strand, within Pf6N2E2_747at 857.844 kb on + strand, within Pf6N2E2_747at 857.844 kb on + strand, within Pf6N2E2_747at 857.844 kb on + strand, within Pf6N2E2_747at 857.845 kb on - strand, within Pf6N2E2_747at 857.980 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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856,184 + -0.9
856,184 + +0.9
856,270 + -1.0
856,271 - +0.6
856,363 + -0.6
856,364 - -0.5
856,433 + Pf6N2E2_745 0.26 -1.4
856,433 + Pf6N2E2_745 0.26 -0.1
856,433 + Pf6N2E2_745 0.26 -0.1
856,433 + Pf6N2E2_745 0.26 +0.6
856,433 + Pf6N2E2_745 0.26 +0.2
856,433 + Pf6N2E2_745 0.26 +0.3
856,433 + Pf6N2E2_745 0.26 +0.3
856,433 + Pf6N2E2_745 0.26 +0.0
856,434 - Pf6N2E2_745 0.26 +0.4
856,434 - Pf6N2E2_745 0.26 -0.4
856,434 - Pf6N2E2_745 0.26 +0.3
856,434 - Pf6N2E2_745 0.26 +0.6
856,659 + +1.7
856,674 + +0.3
856,674 + +1.0
856,674 + +1.0
856,675 - -0.4
856,794 + +0.9
856,794 + -0.1
856,794 + +1.0
856,794 + +0.1
856,795 - +0.4
856,795 - -0.3
856,795 - -1.6
856,795 - -0.1
856,811 - -1.0
856,811 - -1.0
856,822 - -0.2
857,031 - Pf6N2E2_746 0.79 -1.7
857,043 + Pf6N2E2_746 0.84 +0.2
857,081 + -0.2
857,081 + -0.7
857,081 + -0.7
857,081 + +0.2
857,081 + -0.4
857,081 + -1.1
857,082 - -1.2
857,082 - +0.2
857,088 + +0.1
857,088 + +0.0
857,088 + +0.5
857,089 - +1.0
857,089 - -0.4
857,123 + -0.4
857,123 + -0.1
857,476 - Pf6N2E2_747 0.43 +0.6
857,707 - Pf6N2E2_747 0.69 +1.7
857,752 + Pf6N2E2_747 0.74 +0.8
857,831 + Pf6N2E2_747 0.83 +1.2
857,831 + Pf6N2E2_747 0.83 +1.0
857,831 + Pf6N2E2_747 0.83 -0.7
857,831 + Pf6N2E2_747 0.83 -0.4
857,832 - Pf6N2E2_747 0.83 -0.4
857,832 - Pf6N2E2_747 0.83 +0.9
857,844 + Pf6N2E2_747 0.84 +0.3
857,844 + Pf6N2E2_747 0.84 -0.4
857,844 + Pf6N2E2_747 0.84 +0.6
857,845 - Pf6N2E2_747 0.84 +0.3
857,980 + +0.6

Or see this region's nucleotide sequence