Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_34

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_33 and Pf6N2E2_34 are separated by 56 nucleotidesPf6N2E2_34 and Pf6N2E2_35 are separated by 12 nucleotides Pf6N2E2_33 - Diaminopimelate epimerase (EC 5.1.1.7), at 71,998 to 72,999 _33 Pf6N2E2_34 - Cytosine deaminase (EC 3.5.4.1), at 73,056 to 74,303 _34 Pf6N2E2_35 - Cytosine permease, at 74,316 to 75,587 _35 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2 3at 72.255 kb on + strand, within Pf6N2E2_33at 72.694 kb on + strand, within Pf6N2E2_33at 72.695 kb on - strand, within Pf6N2E2_33at 73.130 kb on - strandat 73.162 kb on + strandat 73.163 kb on - strandat 73.340 kb on + strand, within Pf6N2E2_34at 73.458 kb on - strand, within Pf6N2E2_34at 73.549 kb on + strand, within Pf6N2E2_34at 73.550 kb on - strand, within Pf6N2E2_34at 73.561 kb on + strand, within Pf6N2E2_34at 73.562 kb on - strand, within Pf6N2E2_34at 73.756 kb on + strand, within Pf6N2E2_34at 73.756 kb on + strand, within Pf6N2E2_34at 74.317 kb on + strandat 74.317 kb on + strandat 74.359 kb on - strandat 74.371 kb on - strandat 74.371 kb on - strandat 74.371 kb on - strandat 74.371 kb on - strandat 74.371 kb on - strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.378 kb on - strandat 74.378 kb on - strandat 74.378 kb on - strandat 74.378 kb on - strandat 74.593 kb on + strand, within Pf6N2E2_35at 74.594 kb on - strand, within Pf6N2E2_35at 74.612 kb on - strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.717 kb on - strand, within Pf6N2E2_35at 74.717 kb on - strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.822 kb on - strand, within Pf6N2E2_35at 75.107 kb on - strand, within Pf6N2E2_35at 75.107 kb on - strand, within Pf6N2E2_35at 75.139 kb on + strand, within Pf6N2E2_35at 75.140 kb on - strand, within Pf6N2E2_35at 75.140 kb on - strand, within Pf6N2E2_35at 75.211 kb on + strand, within Pf6N2E2_35at 75.211 kb on + strand, within Pf6N2E2_35at 75.211 kb on + strand, within Pf6N2E2_35at 75.212 kb on - strand, within Pf6N2E2_35at 75.212 kb on - strand, within Pf6N2E2_35at 75.253 kb on + strand, within Pf6N2E2_35

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
72,255 + Pf6N2E2_33 0.26 -0.2
72,694 + Pf6N2E2_33 0.69 -1.1
72,695 - Pf6N2E2_33 0.70 -0.5
73,130 - -0.1
73,162 + -0.9
73,163 - -1.5
73,340 + Pf6N2E2_34 0.23 -1.6
73,458 - Pf6N2E2_34 0.32 -0.0
73,549 + Pf6N2E2_34 0.40 -0.7
73,550 - Pf6N2E2_34 0.40 -0.3
73,561 + Pf6N2E2_34 0.40 -0.2
73,562 - Pf6N2E2_34 0.41 -0.6
73,756 + Pf6N2E2_34 0.56 -0.8
73,756 + Pf6N2E2_34 0.56 -0.7
74,317 + -0.0
74,317 + +0.3
74,359 - -0.8
74,371 - +0.8
74,371 - -0.5
74,371 - -0.4
74,371 - +0.8
74,371 - -0.3
74,377 + -0.6
74,377 + -2.2
74,377 + -1.0
74,377 + -0.4
74,377 + -0.8
74,377 + +0.8
74,378 - +0.8
74,378 - -1.1
74,378 - -1.7
74,378 - -0.4
74,593 + Pf6N2E2_35 0.22 -0.2
74,594 - Pf6N2E2_35 0.22 -0.6
74,612 - Pf6N2E2_35 0.23 +0.9
74,716 + Pf6N2E2_35 0.31 -1.5
74,716 + Pf6N2E2_35 0.31 +0.1
74,716 + Pf6N2E2_35 0.31 -1.2
74,716 + Pf6N2E2_35 0.31 +1.2
74,716 + Pf6N2E2_35 0.31 -0.8
74,717 - Pf6N2E2_35 0.32 +0.1
74,717 - Pf6N2E2_35 0.32 -0.2
74,821 + Pf6N2E2_35 0.40 +0.1
74,821 + Pf6N2E2_35 0.40 +0.2
74,821 + Pf6N2E2_35 0.40 +0.2
74,821 + Pf6N2E2_35 0.40 -0.2
74,821 + Pf6N2E2_35 0.40 +0.5
74,822 - Pf6N2E2_35 0.40 +1.4
75,107 - Pf6N2E2_35 0.62 -0.4
75,107 - Pf6N2E2_35 0.62 +0.6
75,139 + Pf6N2E2_35 0.65 +0.8
75,140 - Pf6N2E2_35 0.65 -0.4
75,140 - Pf6N2E2_35 0.65 -1.0
75,211 + Pf6N2E2_35 0.70 -0.2
75,211 + Pf6N2E2_35 0.70 +0.1
75,211 + Pf6N2E2_35 0.70 -0.8
75,212 - Pf6N2E2_35 0.70 +0.2
75,212 - Pf6N2E2_35 0.70 +1.2
75,253 + Pf6N2E2_35 0.74 +2.8

Or see this region's nucleotide sequence