Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3131 and Pf6N2E2_3132 are separated by 146 nucleotides Pf6N2E2_3132 and Pf6N2E2_3133 overlap by 38 nucleotides Pf6N2E2_3133 and Pf6N2E2_3134 are separated by 44 nucleotides Pf6N2E2_3134 and Pf6N2E2_3135 are separated by 361 nucleotides
Pf6N2E2_3131 - 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 3,622,501 to 3,623,925
_3131
Pf6N2E2_3132 - FIG00954548: hypothetical protein, at 3,624,072 to 3,624,335
_3132
Pf6N2E2_3133 - Death on curing protein, Doc toxin, at 3,624,298 to 3,624,597
_3133
Pf6N2E2_3134 - hypothetical protein, at 3,624,642 to 3,624,827
_3134
Pf6N2E2_3135 - Glucans biosynthesis protein D precursor, at 3,625,189 to 3,626,817
_3135
Position (kb)
3624
3625 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3623.087 kb on + strand, within Pf6N2E2_3131 at 3623.088 kb on - strand, within Pf6N2E2_3131 at 3623.088 kb on - strand, within Pf6N2E2_3131 at 3623.320 kb on + strand, within Pf6N2E2_3131 at 3623.321 kb on - strand, within Pf6N2E2_3131 at 3623.359 kb on + strand, within Pf6N2E2_3131 at 3623.360 kb on - strand, within Pf6N2E2_3131 at 3623.360 kb on - strand, within Pf6N2E2_3131 at 3623.360 kb on - strand, within Pf6N2E2_3131 at 3623.377 kb on + strand, within Pf6N2E2_3131 at 3623.377 kb on + strand, within Pf6N2E2_3131 at 3623.378 kb on - strand, within Pf6N2E2_3131 at 3623.378 kb on - strand, within Pf6N2E2_3131 at 3623.425 kb on + strand, within Pf6N2E2_3131 at 3623.425 kb on + strand, within Pf6N2E2_3131 at 3623.425 kb on + strand, within Pf6N2E2_3131 at 3623.426 kb on - strand, within Pf6N2E2_3131 at 3623.529 kb on + strand, within Pf6N2E2_3131 at 3623.529 kb on + strand, within Pf6N2E2_3131 at 3623.530 kb on - strand, within Pf6N2E2_3131 at 3623.530 kb on - strand, within Pf6N2E2_3131 at 3623.530 kb on - strand, within Pf6N2E2_3131 at 3623.530 kb on - strand, within Pf6N2E2_3131 at 3623.684 kb on + strand, within Pf6N2E2_3131 at 3623.684 kb on + strand, within Pf6N2E2_3131 at 3623.684 kb on + strand, within Pf6N2E2_3131 at 3623.685 kb on - strand, within Pf6N2E2_3131 at 3623.685 kb on - strand, within Pf6N2E2_3131 at 3623.685 kb on - strand, within Pf6N2E2_3131 at 3623.779 kb on + strand, within Pf6N2E2_3131 at 3623.779 kb on + strand, within Pf6N2E2_3131 at 3623.780 kb on - strand, within Pf6N2E2_3131 at 3623.780 kb on - strand, within Pf6N2E2_3131 at 3623.875 kb on + strand at 3623.875 kb on + strand at 3623.875 kb on + strand at 3623.875 kb on + strand at 3623.875 kb on + strand at 3623.876 kb on - strand at 3623.876 kb on - strand at 3623.876 kb on - strand at 3623.876 kb on - strand at 3623.891 kb on - strand at 3623.980 kb on - strand at 3623.980 kb on - strand at 3623.980 kb on - strand at 3624.044 kb on + strand at 3624.051 kb on + strand at 3624.052 kb on - strand at 3624.052 kb on - strand at 3624.052 kb on - strand at 3624.052 kb on - strand at 3624.052 kb on - strand at 3624.053 kb on + strand at 3624.053 kb on + strand at 3624.054 kb on - strand at 3624.054 kb on - strand at 3624.163 kb on - strand, within Pf6N2E2_3132 at 3624.163 kb on - strand, within Pf6N2E2_3132 at 3624.190 kb on - strand, within Pf6N2E2_3132 at 3624.190 kb on - strand, within Pf6N2E2_3132 at 3624.190 kb on - strand, within Pf6N2E2_3132 at 3624.284 kb on + strand, within Pf6N2E2_3132 at 3624.284 kb on + strand, within Pf6N2E2_3132 at 3624.284 kb on + strand, within Pf6N2E2_3132 at 3624.311 kb on + strand at 3624.311 kb on + strand at 3624.312 kb on - strand at 3624.680 kb on - strand, within Pf6N2E2_3134 at 3624.816 kb on + strand at 3624.842 kb on + strand at 3624.842 kb on + strand at 3624.842 kb on + strand at 3624.907 kb on - strand at 3624.938 kb on + strand at 3624.943 kb on + strand at 3624.972 kb on + strand at 3624.973 kb on - strand at 3624.973 kb on - strand at 3624.984 kb on + strand at 3624.984 kb on + strand at 3624.985 kb on - strand at 3624.985 kb on - strand at 3625.035 kb on + strand at 3625.035 kb on + strand at 3625.036 kb on - strand at 3625.045 kb on - strand at 3625.083 kb on + strand at 3625.083 kb on + strand at 3625.083 kb on + strand at 3625.083 kb on + strand at 3625.083 kb on + strand at 3625.083 kb on + strand at 3625.083 kb on + strand at 3625.083 kb on + strand at 3625.084 kb on - strand at 3625.084 kb on - strand at 3625.092 kb on + strand at 3625.092 kb on + strand at 3625.092 kb on + strand at 3625.092 kb on + strand at 3625.092 kb on + strand at 3625.093 kb on - strand at 3625.093 kb on - strand at 3625.093 kb on - strand at 3625.135 kb on - strand at 3625.184 kb on + strand at 3625.184 kb on + strand at 3625.184 kb on + strand at 3625.184 kb on + strand at 3625.185 kb on - strand at 3625.185 kb on - strand at 3625.185 kb on - strand at 3625.185 kb on - strand at 3625.185 kb on - strand at 3625.185 kb on - strand at 3625.185 kb on - strand at 3625.185 kb on - strand at 3625.188 kb on + strand at 3625.188 kb on + strand at 3625.188 kb on + strand at 3625.188 kb on + strand at 3625.189 kb on - strand at 3625.189 kb on - strand at 3625.189 kb on - strand at 3625.189 kb on - strand at 3625.189 kb on - strand at 3625.235 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 3,623,087 + Pf6N2E2_3131 0.41 -1.8 3,623,088 - Pf6N2E2_3131 0.41 -0.3 3,623,088 - Pf6N2E2_3131 0.41 +0.4 3,623,320 + Pf6N2E2_3131 0.57 +0.3 3,623,321 - Pf6N2E2_3131 0.58 -0.0 3,623,359 + Pf6N2E2_3131 0.60 +0.1 3,623,360 - Pf6N2E2_3131 0.60 -2.0 3,623,360 - Pf6N2E2_3131 0.60 -1.7 3,623,360 - Pf6N2E2_3131 0.60 -2.0 3,623,377 + Pf6N2E2_3131 0.61 -1.1 3,623,377 + Pf6N2E2_3131 0.61 +0.3 3,623,378 - Pf6N2E2_3131 0.62 -0.7 3,623,378 - Pf6N2E2_3131 0.62 -0.1 3,623,425 + Pf6N2E2_3131 0.65 -0.6 3,623,425 + Pf6N2E2_3131 0.65 +0.5 3,623,425 + Pf6N2E2_3131 0.65 -1.6 3,623,426 - Pf6N2E2_3131 0.65 -0.4 3,623,529 + Pf6N2E2_3131 0.72 -1.2 3,623,529 + Pf6N2E2_3131 0.72 -0.2 3,623,530 - Pf6N2E2_3131 0.72 -0.7 3,623,530 - Pf6N2E2_3131 0.72 +0.7 3,623,530 - Pf6N2E2_3131 0.72 +1.0 3,623,530 - Pf6N2E2_3131 0.72 +0.5 3,623,684 + Pf6N2E2_3131 0.83 +1.0 3,623,684 + Pf6N2E2_3131 0.83 -0.5 3,623,684 + Pf6N2E2_3131 0.83 -0.2 3,623,685 - Pf6N2E2_3131 0.83 +0.3 3,623,685 - Pf6N2E2_3131 0.83 -1.5 3,623,685 - Pf6N2E2_3131 0.83 -0.5 3,623,779 + Pf6N2E2_3131 0.90 +0.1 3,623,779 + Pf6N2E2_3131 0.90 +0.1 3,623,780 - Pf6N2E2_3131 0.90 +0.3 3,623,780 - Pf6N2E2_3131 0.90 -1.5 3,623,875 + +1.7 3,623,875 + +0.3 3,623,875 + +1.0 3,623,875 + +0.5 3,623,875 + +0.6 3,623,876 - +0.3 3,623,876 - -1.6 3,623,876 - -1.0 3,623,876 - +0.8 3,623,891 - -0.3 3,623,980 - -0.9 3,623,980 - +1.5 3,623,980 - -0.5 3,624,044 + +0.0 3,624,051 + +0.7 3,624,052 - -0.2 3,624,052 - +1.8 3,624,052 - +0.3 3,624,052 - -0.6 3,624,052 - +0.6 3,624,053 + -0.2 3,624,053 + +2.7 3,624,054 - +0.9 3,624,054 - +0.1 3,624,163 - Pf6N2E2_3132 0.34 -0.2 3,624,163 - Pf6N2E2_3132 0.34 -0.9 3,624,190 - Pf6N2E2_3132 0.45 -1.5 3,624,190 - Pf6N2E2_3132 0.45 -0.5 3,624,190 - Pf6N2E2_3132 0.45 -1.3 3,624,284 + Pf6N2E2_3132 0.80 +0.1 3,624,284 + Pf6N2E2_3132 0.80 +0.4 3,624,284 + Pf6N2E2_3132 0.80 +0.1 3,624,311 + -0.8 3,624,311 + +1.5 3,624,312 - +1.1 3,624,680 - Pf6N2E2_3134 0.20 +0.2 3,624,816 + +1.1 3,624,842 + +0.1 3,624,842 + -0.0 3,624,842 + +1.1 3,624,907 - -1.6 3,624,938 + +1.1 3,624,943 + -0.1 3,624,972 + +2.7 3,624,973 - +1.0 3,624,973 - +0.9 3,624,984 + -0.5 3,624,984 + +0.3 3,624,985 - -0.5 3,624,985 - +0.7 3,625,035 + +0.7 3,625,035 + +0.1 3,625,036 - +0.1 3,625,045 - -0.3 3,625,083 + +1.0 3,625,083 + +1.6 3,625,083 + +1.5 3,625,083 + +0.8 3,625,083 + +0.9 3,625,083 + +0.4 3,625,083 + +0.1 3,625,083 + +0.4 3,625,084 - +0.1 3,625,084 - -0.5 3,625,092 + +1.1 3,625,092 + -2.0 3,625,092 + +1.7 3,625,092 + +0.5 3,625,092 + +0.7 3,625,093 - +0.7 3,625,093 - -2.0 3,625,093 - -0.1 3,625,135 - +0.4 3,625,184 + +1.2 3,625,184 + +2.1 3,625,184 + +0.5 3,625,184 + +1.1 3,625,185 - +0.1 3,625,185 - +0.1 3,625,185 - -0.5 3,625,185 - +1.9 3,625,185 - +0.0 3,625,185 - -0.3 3,625,185 - +0.4 3,625,185 - -0.1 3,625,188 + +2.1 3,625,188 + +0.5 3,625,188 + +0.9 3,625,188 + -0.5 3,625,189 - +0.9 3,625,189 - -0.6 3,625,189 - -0.7 3,625,189 - -1.1 3,625,189 - +2.1 3,625,235 - -0.8
Or see this region's nucleotide sequence