Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2978

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2977 and Pf6N2E2_2978 are separated by 273 nucleotidesPf6N2E2_2978 and Pf6N2E2_2979 are separated by 263 nucleotidesPf6N2E2_2979 and Pf6N2E2_2980 are separated by 152 nucleotides Pf6N2E2_2977 - Kup system potassium uptake protein, at 3,471,606 to 3,473,507 _2977 Pf6N2E2_2978 - Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase, at 3,473,781 to 3,475,121 _2978 Pf6N2E2_2979 - Histone acetyltransferase HPA2 and related acetyltransferases, at 3,475,385 to 3,475,858 _2979 Pf6N2E2_2980 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 3,476,011 to 3,476,652 _2980 Position (kb) 3473 3474 3475 3476Strain fitness (log2 ratio) -2 -1 0 1 2at 3472.781 kb on - strand, within Pf6N2E2_2977at 3472.781 kb on - strand, within Pf6N2E2_2977at 3472.853 kb on + strand, within Pf6N2E2_2977at 3472.919 kb on - strand, within Pf6N2E2_2977at 3472.919 kb on - strand, within Pf6N2E2_2977at 3472.935 kb on + strand, within Pf6N2E2_2977at 3472.935 kb on + strand, within Pf6N2E2_2977at 3472.936 kb on - strand, within Pf6N2E2_2977at 3473.123 kb on + strand, within Pf6N2E2_2977at 3473.123 kb on + strand, within Pf6N2E2_2977at 3473.123 kb on + strand, within Pf6N2E2_2977at 3473.123 kb on + strand, within Pf6N2E2_2977at 3473.124 kb on - strand, within Pf6N2E2_2977at 3473.124 kb on - strand, within Pf6N2E2_2977at 3473.124 kb on - strand, within Pf6N2E2_2977at 3473.135 kb on - strand, within Pf6N2E2_2977at 3473.278 kb on + strand, within Pf6N2E2_2977at 3473.278 kb on + strand, within Pf6N2E2_2977at 3473.278 kb on + strand, within Pf6N2E2_2977at 3473.278 kb on + strand, within Pf6N2E2_2977at 3473.279 kb on - strand, within Pf6N2E2_2977at 3473.279 kb on - strand, within Pf6N2E2_2977at 3473.279 kb on - strand, within Pf6N2E2_2977at 3473.279 kb on - strand, within Pf6N2E2_2977at 3473.279 kb on - strand, within Pf6N2E2_2977at 3473.334 kb on + strandat 3473.335 kb on - strandat 3473.355 kb on + strandat 3473.356 kb on - strandat 3473.356 kb on - strandat 3473.392 kb on + strandat 3473.393 kb on - strandat 3473.393 kb on - strandat 3473.393 kb on - strandat 3473.393 kb on - strandat 3473.393 kb on - strandat 3473.492 kb on + strandat 3473.492 kb on + strandat 3473.493 kb on - strandat 3473.493 kb on - strandat 3473.493 kb on - strandat 3473.493 kb on - strandat 3473.550 kb on + strandat 3473.550 kb on + strandat 3473.550 kb on + strandat 3473.550 kb on + strandat 3473.551 kb on - strandat 3473.581 kb on - strandat 3473.584 kb on + strandat 3473.585 kb on - strandat 3473.585 kb on - strandat 3473.610 kb on + strandat 3473.610 kb on + strandat 3473.611 kb on - strandat 3473.611 kb on - strandat 3473.642 kb on + strandat 3473.642 kb on + strandat 3473.659 kb on + strandat 3473.659 kb on + strandat 3473.659 kb on + strandat 3473.671 kb on + strandat 3473.671 kb on + strandat 3473.671 kb on + strandat 3473.671 kb on + strandat 3473.672 kb on - strandat 3473.672 kb on - strandat 3473.672 kb on - strandat 3473.672 kb on - strandat 3473.672 kb on - strandat 3473.765 kb on + strandat 3473.766 kb on - strandat 3473.776 kb on + strandat 3473.824 kb on + strandat 3473.824 kb on + strandat 3473.892 kb on + strandat 3473.892 kb on + strandat 3473.893 kb on - strandat 3473.910 kb on + strandat 3473.910 kb on + strandat 3473.911 kb on - strandat 3474.210 kb on + strand, within Pf6N2E2_2978at 3474.385 kb on - strand, within Pf6N2E2_2978at 3474.403 kb on - strand, within Pf6N2E2_2978at 3474.498 kb on + strand, within Pf6N2E2_2978at 3474.498 kb on + strand, within Pf6N2E2_2978at 3474.498 kb on + strand, within Pf6N2E2_2978at 3474.498 kb on + strand, within Pf6N2E2_2978at 3474.498 kb on + strand, within Pf6N2E2_2978at 3474.498 kb on + strand, within Pf6N2E2_2978at 3474.499 kb on - strand, within Pf6N2E2_2978at 3474.499 kb on - strand, within Pf6N2E2_2978at 3474.499 kb on - strand, within Pf6N2E2_2978at 3474.499 kb on - strand, within Pf6N2E2_2978at 3474.499 kb on - strand, within Pf6N2E2_2978at 3474.499 kb on - strand, within Pf6N2E2_2978at 3474.499 kb on - strand, within Pf6N2E2_2978at 3474.499 kb on - strand, within Pf6N2E2_2978at 3474.504 kb on + strand, within Pf6N2E2_2978at 3474.742 kb on - strand, within Pf6N2E2_2978at 3474.795 kb on + strand, within Pf6N2E2_2978at 3474.795 kb on + strand, within Pf6N2E2_2978at 3475.344 kb on - strandat 3475.461 kb on + strand, within Pf6N2E2_2979at 3475.493 kb on + strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.529 kb on + strand, within Pf6N2E2_2979at 3475.674 kb on - strand, within Pf6N2E2_2979at 3475.674 kb on - strand, within Pf6N2E2_2979at 3475.674 kb on - strand, within Pf6N2E2_2979at 3475.742 kb on + strand, within Pf6N2E2_2979at 3475.742 kb on + strand, within Pf6N2E2_2979at 3475.743 kb on - strand, within Pf6N2E2_2979at 3475.743 kb on - strand, within Pf6N2E2_2979at 3475.824 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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3,472,781 - Pf6N2E2_2977 0.62 -1.8
3,472,781 - Pf6N2E2_2977 0.62 -0.2
3,472,853 + Pf6N2E2_2977 0.66 -1.3
3,472,919 - Pf6N2E2_2977 0.69 +0.4
3,472,919 - Pf6N2E2_2977 0.69 -0.2
3,472,935 + Pf6N2E2_2977 0.70 +2.7
3,472,935 + Pf6N2E2_2977 0.70 +2.1
3,472,936 - Pf6N2E2_2977 0.70 +0.1
3,473,123 + Pf6N2E2_2977 0.80 +0.6
3,473,123 + Pf6N2E2_2977 0.80 +0.8
3,473,123 + Pf6N2E2_2977 0.80 +0.7
3,473,123 + Pf6N2E2_2977 0.80 +2.7
3,473,124 - Pf6N2E2_2977 0.80 +0.1
3,473,124 - Pf6N2E2_2977 0.80 +0.8
3,473,124 - Pf6N2E2_2977 0.80 -0.3
3,473,135 - Pf6N2E2_2977 0.80 +0.5
3,473,278 + Pf6N2E2_2977 0.88 -0.1
3,473,278 + Pf6N2E2_2977 0.88 +1.1
3,473,278 + Pf6N2E2_2977 0.88 +0.1
3,473,278 + Pf6N2E2_2977 0.88 -1.2
3,473,279 - Pf6N2E2_2977 0.88 -0.2
3,473,279 - Pf6N2E2_2977 0.88 -1.2
3,473,279 - Pf6N2E2_2977 0.88 -0.2
3,473,279 - Pf6N2E2_2977 0.88 +1.2
3,473,279 - Pf6N2E2_2977 0.88 +0.6
3,473,334 + +0.8
3,473,335 - -0.4
3,473,355 + +0.8
3,473,356 - +0.6
3,473,356 - -0.2
3,473,392 + +0.5
3,473,393 - +0.2
3,473,393 - +0.2
3,473,393 - +0.6
3,473,393 - +1.1
3,473,393 - +0.6
3,473,492 + -0.5
3,473,492 + -1.8
3,473,493 - +1.1
3,473,493 - +0.1
3,473,493 - -0.8
3,473,493 - -0.2
3,473,550 + +0.6
3,473,550 + +0.8
3,473,550 + -0.8
3,473,550 + +0.8
3,473,551 - -0.3
3,473,581 - -0.5
3,473,584 + +0.1
3,473,585 - +0.6
3,473,585 - -0.1
3,473,610 + +0.8
3,473,610 + +1.1
3,473,611 - +0.2
3,473,611 - +1.1
3,473,642 + +0.8
3,473,642 + +1.1
3,473,659 + -0.3
3,473,659 + +0.0
3,473,659 + +0.2
3,473,671 + -0.9
3,473,671 + +0.4
3,473,671 + -0.0
3,473,671 + -0.5
3,473,672 - -0.5
3,473,672 - +0.1
3,473,672 - -1.0
3,473,672 - +0.1
3,473,672 - -0.3
3,473,765 + -0.5
3,473,766 - +0.5
3,473,776 + -0.5
3,473,824 + -0.5
3,473,824 + -0.7
3,473,892 + +1.1
3,473,892 + -0.5
3,473,893 - -0.0
3,473,910 + +1.7
3,473,910 + -0.3
3,473,911 - +0.1
3,474,210 + Pf6N2E2_2978 0.32 -0.9
3,474,385 - Pf6N2E2_2978 0.45 -1.4
3,474,403 - Pf6N2E2_2978 0.46 +0.2
3,474,498 + Pf6N2E2_2978 0.53 +0.8
3,474,498 + Pf6N2E2_2978 0.53 -0.7
3,474,498 + Pf6N2E2_2978 0.53 -0.7
3,474,498 + Pf6N2E2_2978 0.53 +0.6
3,474,498 + Pf6N2E2_2978 0.53 -0.1
3,474,498 + Pf6N2E2_2978 0.53 +0.1
3,474,499 - Pf6N2E2_2978 0.54 -1.9
3,474,499 - Pf6N2E2_2978 0.54 -0.5
3,474,499 - Pf6N2E2_2978 0.54 -1.2
3,474,499 - Pf6N2E2_2978 0.54 -1.1
3,474,499 - Pf6N2E2_2978 0.54 -1.6
3,474,499 - Pf6N2E2_2978 0.54 -0.2
3,474,499 - Pf6N2E2_2978 0.54 +1.1
3,474,499 - Pf6N2E2_2978 0.54 -1.8
3,474,504 + Pf6N2E2_2978 0.54 -1.9
3,474,742 - Pf6N2E2_2978 0.72 -1.6
3,474,795 + Pf6N2E2_2978 0.76 +0.1
3,474,795 + Pf6N2E2_2978 0.76 -0.2
3,475,344 - +0.1
3,475,461 + Pf6N2E2_2979 0.16 -0.2
3,475,493 + Pf6N2E2_2979 0.23 +0.1
3,475,494 - Pf6N2E2_2979 0.23 -2.4
3,475,494 - Pf6N2E2_2979 0.23 -1.4
3,475,494 - Pf6N2E2_2979 0.23 -0.2
3,475,494 - Pf6N2E2_2979 0.23 -0.6
3,475,494 - Pf6N2E2_2979 0.23 -0.6
3,475,494 - Pf6N2E2_2979 0.23 -2.7
3,475,494 - Pf6N2E2_2979 0.23 -1.6
3,475,529 + Pf6N2E2_2979 0.30 +1.1
3,475,674 - Pf6N2E2_2979 0.61 -0.7
3,475,674 - Pf6N2E2_2979 0.61 +1.1
3,475,674 - Pf6N2E2_2979 0.61 -0.4
3,475,742 + Pf6N2E2_2979 0.75 -0.3
3,475,742 + Pf6N2E2_2979 0.75 +0.1
3,475,743 - Pf6N2E2_2979 0.76 +0.5
3,475,743 - Pf6N2E2_2979 0.76 +0.5
3,475,824 - -1.0
3,475,907 - -0.5
3,475,907 - -0.7
3,475,907 - -0.6
3,475,907 - -0.0
3,475,907 - +0.4
3,475,907 - -0.2

Or see this region's nucleotide sequence