Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1024

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1023 and Pf6N2E2_1024 overlap by 4 nucleotidesPf6N2E2_1024 and Pf6N2E2_1025 are separated by 12 nucleotides Pf6N2E2_1023 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,196,073 to 1,197,065 _1023 Pf6N2E2_1024 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 1,197,062 to 1,198,414 _1024 Pf6N2E2_1025 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,198,427 to 1,199,380 _1025 Position (kb) 1197 1198 1199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1196.233 kb on + strand, within Pf6N2E2_1023at 1196.233 kb on + strand, within Pf6N2E2_1023at 1196.233 kb on + strand, within Pf6N2E2_1023at 1196.233 kb on + strand, within Pf6N2E2_1023at 1196.233 kb on + strand, within Pf6N2E2_1023at 1196.233 kb on + strand, within Pf6N2E2_1023at 1196.233 kb on + strand, within Pf6N2E2_1023at 1196.234 kb on - strand, within Pf6N2E2_1023at 1196.234 kb on - strand, within Pf6N2E2_1023at 1196.234 kb on - strand, within Pf6N2E2_1023at 1196.234 kb on - strand, within Pf6N2E2_1023at 1196.344 kb on + strand, within Pf6N2E2_1023at 1196.344 kb on + strand, within Pf6N2E2_1023at 1196.344 kb on + strand, within Pf6N2E2_1023at 1196.407 kb on + strand, within Pf6N2E2_1023at 1196.407 kb on + strand, within Pf6N2E2_1023at 1196.408 kb on - strand, within Pf6N2E2_1023at 1196.488 kb on + strand, within Pf6N2E2_1023at 1196.488 kb on + strand, within Pf6N2E2_1023at 1196.488 kb on + strand, within Pf6N2E2_1023at 1196.489 kb on - strand, within Pf6N2E2_1023at 1196.869 kb on + strand, within Pf6N2E2_1023at 1196.923 kb on + strand, within Pf6N2E2_1023at 1197.057 kb on + strandat 1197.058 kb on - strandat 1197.058 kb on - strandat 1197.154 kb on + strandat 1197.155 kb on - strandat 1197.675 kb on + strand, within Pf6N2E2_1024at 1197.897 kb on + strand, within Pf6N2E2_1024at 1197.898 kb on - strand, within Pf6N2E2_1024at 1198.116 kb on + strand, within Pf6N2E2_1024at 1198.207 kb on - strand, within Pf6N2E2_1024at 1198.299 kb on + strandat 1198.527 kb on + strand, within Pf6N2E2_1025at 1198.528 kb on - strand, within Pf6N2E2_1025at 1198.528 kb on - strand, within Pf6N2E2_1025at 1198.736 kb on - strand, within Pf6N2E2_1025at 1198.767 kb on + strand, within Pf6N2E2_1025at 1198.767 kb on + strand, within Pf6N2E2_1025at 1198.974 kb on + strand, within Pf6N2E2_1025at 1199.071 kb on + strand, within Pf6N2E2_1025at 1199.072 kb on - strand, within Pf6N2E2_1025at 1199.139 kb on + strand, within Pf6N2E2_1025at 1199.139 kb on + strand, within Pf6N2E2_1025at 1199.139 kb on + strand, within Pf6N2E2_1025at 1199.139 kb on + strand, within Pf6N2E2_1025at 1199.140 kb on - strand, within Pf6N2E2_1025at 1199.140 kb on - strand, within Pf6N2E2_1025

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,196,233 + Pf6N2E2_1023 0.16 -0.2
1,196,233 + Pf6N2E2_1023 0.16 -1.1
1,196,233 + Pf6N2E2_1023 0.16 -0.7
1,196,233 + Pf6N2E2_1023 0.16 +1.2
1,196,233 + Pf6N2E2_1023 0.16 -1.8
1,196,233 + Pf6N2E2_1023 0.16 -0.5
1,196,233 + Pf6N2E2_1023 0.16 -0.7
1,196,234 - Pf6N2E2_1023 0.16 -0.5
1,196,234 - Pf6N2E2_1023 0.16 +1.1
1,196,234 - Pf6N2E2_1023 0.16 -2.1
1,196,234 - Pf6N2E2_1023 0.16 +0.5
1,196,344 + Pf6N2E2_1023 0.27 +0.4
1,196,344 + Pf6N2E2_1023 0.27 -0.3
1,196,344 + Pf6N2E2_1023 0.27 +0.3
1,196,407 + Pf6N2E2_1023 0.34 -1.9
1,196,407 + Pf6N2E2_1023 0.34 -3.1
1,196,408 - Pf6N2E2_1023 0.34 +0.9
1,196,488 + Pf6N2E2_1023 0.42 -0.6
1,196,488 + Pf6N2E2_1023 0.42 -1.1
1,196,488 + Pf6N2E2_1023 0.42 -1.9
1,196,489 - Pf6N2E2_1023 0.42 +1.5
1,196,869 + Pf6N2E2_1023 0.80 +1.0
1,196,923 + Pf6N2E2_1023 0.86 +0.3
1,197,057 + -0.5
1,197,058 - -1.3
1,197,058 - -1.1
1,197,154 + +0.9
1,197,155 - -0.2
1,197,675 + Pf6N2E2_1024 0.45 -0.5
1,197,897 + Pf6N2E2_1024 0.62 +0.5
1,197,898 - Pf6N2E2_1024 0.62 -1.3
1,198,116 + Pf6N2E2_1024 0.78 -1.1
1,198,207 - Pf6N2E2_1024 0.85 -0.5
1,198,299 + +0.2
1,198,527 + Pf6N2E2_1025 0.10 -0.1
1,198,528 - Pf6N2E2_1025 0.11 +0.3
1,198,528 - Pf6N2E2_1025 0.11 +0.5
1,198,736 - Pf6N2E2_1025 0.32 -0.8
1,198,767 + Pf6N2E2_1025 0.36 -0.4
1,198,767 + Pf6N2E2_1025 0.36 -0.2
1,198,974 + Pf6N2E2_1025 0.57 +0.3
1,199,071 + Pf6N2E2_1025 0.68 +0.5
1,199,072 - Pf6N2E2_1025 0.68 -0.7
1,199,139 + Pf6N2E2_1025 0.75 +2.1
1,199,139 + Pf6N2E2_1025 0.75 +1.5
1,199,139 + Pf6N2E2_1025 0.75 +1.3
1,199,139 + Pf6N2E2_1025 0.75 +0.3
1,199,140 - Pf6N2E2_1025 0.75 -0.1
1,199,140 - Pf6N2E2_1025 0.75 +1.1

Or see this region's nucleotide sequence