Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03124 and SMc03123 are separated by 381 nucleotides SMc03123 and SMc03075 are separated by 109 nucleotides SMc03075 and SMc03221 are separated by 210 nucleotides SMc03221 and SMc03220 are separated by 204 nucleotides
SMc03124: SMc03124 - periplasmic binding ABC transporter protein, at 3,205,150 to 3,206,778
SMc03124
SMc03123: SMc03123 - transcriptional regulator, at 3,207,160 to 3,208,107
SMc03123
SMc03075: SMc03075 - tRNA-Met, at 3,208,217 to 3,208,293
SMc03075
SMc03221: SMc03221 - ribosomal RNA-5S, at 3,208,504 to 3,208,623
SMc03221
SMc03220: SMc03220 - ribosomal RNA-23S, at 3,208,828 to 3,211,702
SMc03220
Position (kb) 3207
3208
3209 Strain fitness (log2 ratio) -1
0
1
2
3 at 3206.838 kb on - strand at 3206.838 kb on - strand at 3206.838 kb on - strand at 3207.112 kb on - strand at 3207.199 kb on + strand at 3207.199 kb on + strand at 3207.316 kb on - strand, within SMc03123 at 3207.316 kb on - strand, within SMc03123 at 3207.316 kb on - strand, within SMc03123 at 3207.534 kb on + strand, within SMc03123 at 3207.534 kb on + strand, within SMc03123 at 3207.534 kb on + strand, within SMc03123 at 3207.535 kb on - strand, within SMc03123 at 3207.535 kb on - strand, within SMc03123 at 3207.535 kb on - strand, within SMc03123 at 3207.535 kb on - strand, within SMc03123 at 3207.535 kb on - strand, within SMc03123 at 3207.535 kb on - strand, within SMc03123 at 3207.662 kb on - strand, within SMc03123 at 3207.675 kb on + strand, within SMc03123 at 3207.676 kb on - strand, within SMc03123 at 3207.679 kb on + strand, within SMc03123 at 3207.679 kb on + strand, within SMc03123 at 3207.679 kb on + strand, within SMc03123 at 3207.679 kb on + strand, within SMc03123 at 3207.679 kb on + strand, within SMc03123 at 3207.680 kb on - strand, within SMc03123 at 3207.764 kb on + strand, within SMc03123 at 3207.764 kb on + strand, within SMc03123 at 3207.764 kb on + strand, within SMc03123 at 3207.764 kb on + strand, within SMc03123 at 3207.764 kb on + strand, within SMc03123 at 3207.764 kb on + strand, within SMc03123 at 3207.764 kb on + strand, within SMc03123 at 3207.764 kb on + strand, within SMc03123 at 3207.765 kb on - strand, within SMc03123 at 3207.765 kb on - strand, within SMc03123 at 3207.765 kb on - strand, within SMc03123 at 3207.765 kb on - strand, within SMc03123 at 3207.765 kb on - strand, within SMc03123 at 3207.768 kb on + strand, within SMc03123 at 3207.770 kb on - strand, within SMc03123 at 3207.815 kb on - strand, within SMc03123 at 3207.886 kb on + strand, within SMc03123 at 3207.889 kb on - strand, within SMc03123 at 3208.203 kb on + strand at 3208.203 kb on + strand at 3208.203 kb on + strand at 3208.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,206,838 - -0.0 3,206,838 - -0.4 3,206,838 - +0.3 3,207,112 - +1.0 3,207,199 + +1.4 3,207,199 + +1.7 3,207,316 - SMc03123 0.16 -0.9 3,207,316 - SMc03123 0.16 +2.5 3,207,316 - SMc03123 0.16 +1.7 3,207,534 + SMc03123 0.39 +1.1 3,207,534 + SMc03123 0.39 +1.1 3,207,534 + SMc03123 0.39 +1.5 3,207,535 - SMc03123 0.40 +0.7 3,207,535 - SMc03123 0.40 +1.9 3,207,535 - SMc03123 0.40 +0.7 3,207,535 - SMc03123 0.40 +1.9 3,207,535 - SMc03123 0.40 +0.9 3,207,535 - SMc03123 0.40 +1.2 3,207,662 - SMc03123 0.53 +0.8 3,207,675 + SMc03123 0.54 +0.9 3,207,676 - SMc03123 0.54 +1.2 3,207,679 + SMc03123 0.55 +1.0 3,207,679 + SMc03123 0.55 +1.1 3,207,679 + SMc03123 0.55 +0.1 3,207,679 + SMc03123 0.55 +1.0 3,207,679 + SMc03123 0.55 +0.5 3,207,680 - SMc03123 0.55 +1.4 3,207,764 + SMc03123 0.64 +1.0 3,207,764 + SMc03123 0.64 +0.8 3,207,764 + SMc03123 0.64 +0.9 3,207,764 + SMc03123 0.64 +1.7 3,207,764 + SMc03123 0.64 +1.1 3,207,764 + SMc03123 0.64 +3.1 3,207,764 + SMc03123 0.64 +1.1 3,207,764 + SMc03123 0.64 +0.4 3,207,765 - SMc03123 0.64 +1.8 3,207,765 - SMc03123 0.64 +1.4 3,207,765 - SMc03123 0.64 +1.1 3,207,765 - SMc03123 0.64 +1.1 3,207,765 - SMc03123 0.64 +0.9 3,207,768 + SMc03123 0.64 +0.3 3,207,770 - SMc03123 0.64 -1.4 3,207,815 - SMc03123 0.69 +1.1 3,207,886 + SMc03123 0.77 +0.8 3,207,889 - SMc03123 0.77 +0.9 3,208,203 + +1.4 3,208,203 + +0.4 3,208,203 + -1.7 3,208,210 - -0.9
Or see this region's nucleotide sequence