Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02853 and SMc02854 are separated by 66 nucleotides SMc02854 and SMc02855 are separated by 98 nucleotides
SMc02853: SMc02853 - hypothetical protein, at 204,256 to 205,203
SMc02853
SMc02854: SMc02854 - signal peptide protein, at 205,270 to 205,761
SMc02854
SMc02855: SMc02855 - hypothetical protein, at 205,860 to 206,783
SMc02855
Position (kb) 205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.274 kb on + strand at 204.274 kb on + strand at 204.275 kb on - strand at 204.523 kb on + strand, within SMc02853 at 204.524 kb on - strand, within SMc02853 at 204.839 kb on + strand, within SMc02853 at 204.839 kb on + strand, within SMc02853 at 204.919 kb on + strand, within SMc02853 at 204.919 kb on + strand, within SMc02853 at 204.920 kb on - strand, within SMc02853 at 204.952 kb on + strand, within SMc02853 at 204.953 kb on - strand, within SMc02853 at 204.953 kb on - strand, within SMc02853 at 204.953 kb on - strand, within SMc02853 at 205.111 kb on + strand at 205.201 kb on + strand at 205.201 kb on + strand at 205.201 kb on + strand at 205.201 kb on + strand at 205.218 kb on + strand at 205.218 kb on + strand at 205.218 kb on + strand at 205.218 kb on + strand at 205.240 kb on + strand at 205.350 kb on - strand, within SMc02854 at 205.400 kb on + strand, within SMc02854 at 205.469 kb on + strand, within SMc02854 at 205.469 kb on + strand, within SMc02854 at 205.469 kb on + strand, within SMc02854 at 205.470 kb on - strand, within SMc02854 at 205.470 kb on - strand, within SMc02854 at 205.589 kb on + strand, within SMc02854 at 205.608 kb on - strand, within SMc02854 at 205.608 kb on - strand, within SMc02854 at 205.608 kb on - strand, within SMc02854 at 205.632 kb on - strand, within SMc02854 at 205.632 kb on - strand, within SMc02854 at 205.677 kb on - strand, within SMc02854 at 205.761 kb on + strand at 205.762 kb on - strand at 205.762 kb on - strand at 205.762 kb on - strand at 206.027 kb on + strand at 206.027 kb on + strand, within SMc02855 at 206.027 kb on + strand, within SMc02855 at 206.081 kb on - strand, within SMc02855 at 206.081 kb on - strand, within SMc02855 at 206.257 kb on + strand, within SMc02855 at 206.257 kb on + strand, within SMc02855 at 206.257 kb on + strand, within SMc02855 at 206.257 kb on + strand, within SMc02855 at 206.257 kb on + strand, within SMc02855 at 206.258 kb on - strand, within SMc02855 at 206.258 kb on - strand, within SMc02855 at 206.258 kb on - strand, within SMc02855 at 206.623 kb on + strand, within SMc02855 at 206.653 kb on + strand, within SMc02855 at 206.653 kb on + strand, within SMc02855 at 206.725 kb on + strand at 206.758 kb on + strand at 206.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 204,274 + -0.8 204,274 + -0.3 204,275 - +0.0 204,523 + SMc02853 0.28 +0.8 204,524 - SMc02853 0.28 -2.3 204,839 + SMc02853 0.61 -1.3 204,839 + SMc02853 0.61 -0.2 204,919 + SMc02853 0.70 +1.0 204,919 + SMc02853 0.70 +1.6 204,920 - SMc02853 0.70 -0.3 204,952 + SMc02853 0.73 -1.0 204,953 - SMc02853 0.74 -0.6 204,953 - SMc02853 0.74 -1.6 204,953 - SMc02853 0.74 -2.7 205,111 + -2.2 205,201 + +0.9 205,201 + -0.6 205,201 + +1.4 205,201 + -0.2 205,218 + -0.2 205,218 + +0.5 205,218 + +0.5 205,218 + +0.8 205,240 + +1.0 205,350 - SMc02854 0.16 +0.9 205,400 + SMc02854 0.26 +1.4 205,469 + SMc02854 0.40 +1.9 205,469 + SMc02854 0.40 +0.3 205,469 + SMc02854 0.40 +0.6 205,470 - SMc02854 0.41 -0.1 205,470 - SMc02854 0.41 +1.2 205,589 + SMc02854 0.65 +0.3 205,608 - SMc02854 0.69 +1.5 205,608 - SMc02854 0.69 +1.2 205,608 - SMc02854 0.69 +1.8 205,632 - SMc02854 0.74 -0.3 205,632 - SMc02854 0.74 +2.3 205,677 - SMc02854 0.83 +0.8 205,761 + +1.5 205,762 - +2.0 205,762 - +0.4 205,762 - +1.7 206,027 + +0.4 206,027 + SMc02855 0.18 +0.1 206,027 + SMc02855 0.18 +0.2 206,081 - SMc02855 0.24 -0.6 206,081 - SMc02855 0.24 -0.4 206,257 + SMc02855 0.43 -0.2 206,257 + SMc02855 0.43 +1.4 206,257 + SMc02855 0.43 +0.3 206,257 + SMc02855 0.43 +1.2 206,257 + SMc02855 0.43 +0.3 206,258 - SMc02855 0.43 -1.1 206,258 - SMc02855 0.43 -1.2 206,258 - SMc02855 0.43 +0.2 206,623 + SMc02855 0.83 -0.5 206,653 + SMc02855 0.86 -0.2 206,653 + SMc02855 0.86 -0.6 206,725 + -0.3 206,758 + +2.1 206,759 - +1.0
Or see this region's nucleotide sequence