Strain Fitness in Sinorhizobium meliloti 1021 around SMc02826

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02825 and SMc02826 are separated by 87 nucleotidesSMc02826 and SMc02827 are separated by 8 nucleotides SMc02825: SMc02825 - aminopeptidase, at 172,213 to 173,604 SMc02825 SMc02826: SMc02826 - transcriptional regulator, at 173,692 to 174,036 SMc02826 SMc02827: SMc02827 - hypothetical protein, at 174,045 to 174,899 SMc02827 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2 3at 172.750 kb on + strand, within SMc02825at 172.750 kb on + strand, within SMc02825at 173.107 kb on + strand, within SMc02825at 173.107 kb on + strand, within SMc02825at 173.188 kb on + strand, within SMc02825at 173.363 kb on - strand, within SMc02825at 173.363 kb on - strand, within SMc02825at 173.576 kb on - strandat 173.607 kb on - strandat 173.607 kb on - strandat 173.607 kb on - strandat 173.689 kb on - strandat 173.707 kb on - strandat 173.707 kb on - strandat 173.805 kb on - strand, within SMc02826at 173.812 kb on + strand, within SMc02826at 173.960 kb on + strand, within SMc02826at 173.961 kb on - strand, within SMc02826at 173.986 kb on + strand, within SMc02826at 174.041 kb on - strandat 174.041 kb on - strandat 174.041 kb on - strandat 174.294 kb on + strandat 174.303 kb on + strand, within SMc02827at 174.304 kb on - strand, within SMc02827at 174.550 kb on - strand, within SMc02827at 174.835 kb on + strandat 174.835 kb on + strandat 174.867 kb on + strandat 174.867 kb on + strandat 174.867 kb on + strandat 175.033 kb on + strandat 175.033 kb on + strandat 175.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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172,750 + SMc02825 0.39 +0.3
172,750 + SMc02825 0.39 +0.8
173,107 + SMc02825 0.64 -1.7
173,107 + SMc02825 0.64 -0.4
173,188 + SMc02825 0.70 +0.7
173,363 - SMc02825 0.83 -1.8
173,363 - SMc02825 0.83 -0.7
173,576 - +0.2
173,607 - +1.6
173,607 - +1.1
173,607 - +0.8
173,689 - +3.6
173,707 - +0.7
173,707 - +1.1
173,805 - SMc02826 0.33 -0.0
173,812 + SMc02826 0.35 -0.3
173,960 + SMc02826 0.78 +1.8
173,961 - SMc02826 0.78 +1.7
173,986 + SMc02826 0.85 +0.9
174,041 - -0.2
174,041 - +0.6
174,041 - +0.2
174,294 + +1.0
174,303 + SMc02827 0.30 +2.0
174,304 - SMc02827 0.30 -0.6
174,550 - SMc02827 0.59 -1.1
174,835 + +0.8
174,835 + -0.9
174,867 + -0.6
174,867 + -1.5
174,867 + -1.0
175,033 + +0.6
175,033 + -0.0
175,034 - -1.1

Or see this region's nucleotide sequence