Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02824 and SMc02825 are separated by 130 nucleotides SMc02825 and SMc02826 are separated by 87 nucleotides SMc02826 and SMc02827 are separated by 8 nucleotides
SMc02824: SMc02824 - hypothetical protein, at 171,273 to 172,082
SMc02824
SMc02825: SMc02825 - aminopeptidase, at 172,213 to 173,604
SMc02825
SMc02826: SMc02826 - transcriptional regulator, at 173,692 to 174,036
SMc02826
SMc02827: SMc02827 - hypothetical protein, at 174,045 to 174,899
SMc02827
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 171.331 kb on + strand at 171.481 kb on + strand, within SMc02824 at 171.481 kb on + strand, within SMc02824 at 171.517 kb on + strand, within SMc02824 at 171.518 kb on - strand, within SMc02824 at 171.518 kb on - strand, within SMc02824 at 171.518 kb on - strand, within SMc02824 at 171.733 kb on + strand, within SMc02824 at 171.766 kb on + strand, within SMc02824 at 171.874 kb on + strand, within SMc02824 at 171.875 kb on - strand, within SMc02824 at 171.875 kb on - strand, within SMc02824 at 172.278 kb on + strand at 172.278 kb on + strand at 172.302 kb on + strand at 172.504 kb on - strand, within SMc02825 at 172.750 kb on + strand, within SMc02825 at 172.750 kb on + strand, within SMc02825 at 173.107 kb on + strand, within SMc02825 at 173.107 kb on + strand, within SMc02825 at 173.188 kb on + strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.576 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.689 kb on - strand at 173.707 kb on - strand at 173.707 kb on - strand at 173.805 kb on - strand, within SMc02826 at 173.812 kb on + strand, within SMc02826 at 173.960 kb on + strand, within SMc02826 at 173.961 kb on - strand, within SMc02826 at 173.986 kb on + strand, within SMc02826 at 174.041 kb on - strand at 174.041 kb on - strand at 174.041 kb on - strand at 174.294 kb on + strand at 174.303 kb on + strand, within SMc02827 at 174.304 kb on - strand, within SMc02827 at 174.550 kb on - strand, within SMc02827
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 171,331 + +0.2 171,481 + SMc02824 0.26 -0.7 171,481 + SMc02824 0.26 -0.8 171,517 + SMc02824 0.30 +0.4 171,518 - SMc02824 0.30 +0.7 171,518 - SMc02824 0.30 +1.3 171,518 - SMc02824 0.30 +0.3 171,733 + SMc02824 0.57 -0.1 171,766 + SMc02824 0.61 +0.7 171,874 + SMc02824 0.74 +0.6 171,875 - SMc02824 0.74 +1.6 171,875 - SMc02824 0.74 +0.3 172,278 + +0.9 172,278 + -0.0 172,302 + -1.2 172,504 - SMc02825 0.21 -1.3 172,750 + SMc02825 0.39 +0.3 172,750 + SMc02825 0.39 +0.8 173,107 + SMc02825 0.64 -1.7 173,107 + SMc02825 0.64 -0.4 173,188 + SMc02825 0.70 +0.7 173,363 - SMc02825 0.83 -1.8 173,363 - SMc02825 0.83 -0.7 173,576 - +0.2 173,607 - +1.6 173,607 - +1.1 173,607 - +0.8 173,689 - +3.6 173,707 - +0.7 173,707 - +1.1 173,805 - SMc02826 0.33 -0.0 173,812 + SMc02826 0.35 -0.3 173,960 + SMc02826 0.78 +1.8 173,961 - SMc02826 0.78 +1.7 173,986 + SMc02826 0.85 +0.9 174,041 - -0.2 174,041 - +0.6 174,041 - +0.2 174,294 + +1.0 174,303 + SMc02827 0.30 +2.0 174,304 - SMc02827 0.30 -0.6 174,550 - SMc02827 0.59 -1.1
Or see this region's nucleotide sequence