Strain Fitness in Sinorhizobium meliloti 1021 around SMc02146

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02147 and SMc02146 are separated by 194 nucleotidesSMc02146 and SMc02145 are separated by 91 nucleotidesSMc02145 and SMc02144 overlap by 34 nucleotides SMc02147: SMc02147 - phosphate regulon sensor histidine kinase transmembrane protein, at 565,258 to 566,520 SMc02147 SMc02146: SMc02146 - phosphate-binding periplasmic protein, at 566,715 to 567,749 SMc02146 SMc02145: SMc02145 - signal peptide protein, at 567,841 to 568,446 SMc02145 SMc02144: SMc02144 - phosphate ABC transporter permease, at 568,413 to 569,324 SMc02144 Position (kb) 566 567 568Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 565.744 kb on + strand, within SMc02147at 565.744 kb on + strand, within SMc02147at 565.745 kb on - strand, within SMc02147at 565.745 kb on - strand, within SMc02147at 565.814 kb on - strand, within SMc02147at 566.337 kb on - strand, within SMc02147at 566.442 kb on + strandat 566.442 kb on + strandat 568.259 kb on - strand, within SMc02145at 568.372 kb on - strand, within SMc02145at 568.627 kb on - strand, within SMc02144at 568.627 kb on - strand, within SMc02144at 568.627 kb on - strand, within SMc02144at 568.627 kb on - strand, within SMc02144at 568.696 kb on - strand, within SMc02144at 568.696 kb on - strand, within SMc02144

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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565,744 + SMc02147 0.38 -0.9
565,744 + SMc02147 0.38 +1.2
565,745 - SMc02147 0.39 -1.1
565,745 - SMc02147 0.39 +0.3
565,814 - SMc02147 0.44 -2.9
566,337 - SMc02147 0.85 +1.9
566,442 + +1.9
566,442 + +0.3
568,259 - SMc02145 0.69 -1.2
568,372 - SMc02145 0.88 -0.1
568,627 - SMc02144 0.23 -2.0
568,627 - SMc02144 0.23 +0.3
568,627 - SMc02144 0.23 -0.9
568,627 - SMc02144 0.23 -2.0
568,696 - SMc02144 0.31 -0.7
568,696 - SMc02144 0.31 -1.6

Or see this region's nucleotide sequence