Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01719 and SMc01718 are separated by 243 nucleotides SMc01718 and SMc01717 are separated by 22 nucleotides
SMc01719: SMc01719 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 483,128 to 485,125
SMc01719
SMc01718: SMc01718 - hypothetical protein, at 485,369 to 486,169
SMc01718
SMc01717: SMc01717 - mercuric reductase, at 486,192 to 487,613
SMc01717
Position (kb) 485
486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 484.968 kb on - strand at 484.996 kb on + strand at 484.996 kb on + strand at 484.996 kb on + strand at 484.996 kb on + strand at 485.380 kb on + strand at 485.513 kb on + strand, within SMc01718 at 485.513 kb on + strand, within SMc01718 at 485.514 kb on - strand, within SMc01718 at 485.534 kb on + strand, within SMc01718 at 485.535 kb on - strand, within SMc01718 at 485.535 kb on - strand at 485.535 kb on - strand, within SMc01718 at 485.535 kb on - strand, within SMc01718 at 485.535 kb on - strand, within SMc01718 at 485.535 kb on - strand, within SMc01718 at 485.630 kb on + strand, within SMc01718 at 485.631 kb on - strand, within SMc01718 at 485.631 kb on - strand, within SMc01718 at 485.631 kb on - strand, within SMc01718 at 485.631 kb on - strand, within SMc01718 at 485.858 kb on + strand, within SMc01718 at 485.859 kb on - strand, within SMc01718 at 485.859 kb on - strand, within SMc01718 at 485.859 kb on - strand, within SMc01718 at 485.972 kb on - strand, within SMc01718 at 485.990 kb on + strand, within SMc01718 at 485.990 kb on + strand, within SMc01718 at 485.990 kb on + strand, within SMc01718 at 485.992 kb on + strand, within SMc01718 at 485.992 kb on + strand, within SMc01718 at 485.992 kb on + strand, within SMc01718 at 485.993 kb on - strand, within SMc01718 at 486.141 kb on + strand at 486.142 kb on - strand at 486.145 kb on - strand at 486.145 kb on - strand at 486.145 kb on - strand at 486.145 kb on - strand at 486.145 kb on - strand at 486.330 kb on + strand at 486.330 kb on + strand at 486.551 kb on - strand, within SMc01717 at 487.057 kb on + strand, within SMc01717 at 487.057 kb on + strand, within SMc01717 at 487.058 kb on - strand, within SMc01717 at 487.099 kb on - strand, within SMc01717 at 487.147 kb on - strand, within SMc01717
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 484,968 - +0.4 484,996 + +0.4 484,996 + -1.0 484,996 + -3.1 484,996 + +0.7 485,380 + -0.8 485,513 + SMc01718 0.18 -1.8 485,513 + SMc01718 0.18 -1.6 485,514 - SMc01718 0.18 -0.4 485,534 + SMc01718 0.21 -1.0 485,535 - SMc01718 0.21 -0.5 485,535 - +0.4 485,535 - SMc01718 0.21 -0.5 485,535 - SMc01718 0.21 -0.5 485,535 - SMc01718 0.21 -2.4 485,535 - SMc01718 0.21 -2.3 485,630 + SMc01718 0.33 -1.6 485,631 - SMc01718 0.33 -0.6 485,631 - SMc01718 0.33 +1.2 485,631 - SMc01718 0.33 -1.5 485,631 - SMc01718 0.33 -1.2 485,858 + SMc01718 0.61 -0.8 485,859 - SMc01718 0.61 -1.6 485,859 - SMc01718 0.61 -1.1 485,859 - SMc01718 0.61 -0.8 485,972 - SMc01718 0.75 -2.1 485,990 + SMc01718 0.78 -2.4 485,990 + SMc01718 0.78 -2.3 485,990 + SMc01718 0.78 +0.4 485,992 + SMc01718 0.78 +0.4 485,992 + SMc01718 0.78 -3.3 485,992 + SMc01718 0.78 -0.9 485,993 - SMc01718 0.78 -0.3 486,141 + +0.1 486,142 - +1.9 486,145 - -0.8 486,145 - -0.6 486,145 - +0.9 486,145 - -0.7 486,145 - -0.9 486,330 + -1.1 486,330 + +0.1 486,551 - SMc01717 0.25 -2.1 487,057 + SMc01717 0.61 -1.3 487,057 + SMc01717 0.61 +0.3 487,058 - SMc01717 0.61 +0.3 487,099 - SMc01717 0.64 -0.5 487,147 - SMc01717 0.67 -1.1
Or see this region's nucleotide sequence