Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01706 and SMc01705 are separated by 36 nucleotides SMc01705 and SMc01704 are separated by 184 nucleotides SMc01704 and SMc01703 are separated by 513 nucleotides SMc01703 and SMc01702 are separated by 22 nucleotides
SMc01706: SMc01706 - signal peptide protein, at 506,999 to 507,574
SMc01706
SMc01705: SMc01705 - hypothetical protein, at 507,611 to 508,081
SMc01705
SMc01704: SMc01704 - hypothetical protein, at 508,266 to 508,943
SMc01704
SMc01703: SMc01703 - hypothetical protein, at 509,457 to 509,888
SMc01703
SMc01702: SMc01702 - oxidoreductase, at 509,911 to 510,897
SMc01702
Position (kb) 508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 507.274 kb on + strand, within SMc01706 at 507.274 kb on + strand, within SMc01706 at 507.275 kb on - strand, within SMc01706 at 507.302 kb on + strand, within SMc01706 at 507.302 kb on + strand, within SMc01706 at 507.303 kb on - strand, within SMc01706 at 507.482 kb on + strand, within SMc01706 at 507.482 kb on + strand, within SMc01706 at 507.482 kb on + strand, within SMc01706 at 507.483 kb on - strand at 507.483 kb on - strand, within SMc01706 at 507.483 kb on - strand, within SMc01706 at 507.483 kb on - strand, within SMc01706 at 507.483 kb on - strand, within SMc01706 at 507.583 kb on - strand at 507.680 kb on - strand, within SMc01705 at 507.715 kb on - strand, within SMc01705 at 507.718 kb on + strand, within SMc01705 at 507.719 kb on - strand, within SMc01705 at 507.765 kb on + strand, within SMc01705 at 508.006 kb on + strand, within SMc01705 at 508.029 kb on + strand, within SMc01705 at 508.051 kb on + strand at 508.051 kb on + strand at 508.052 kb on - strand at 508.052 kb on - strand at 508.054 kb on - strand at 508.054 kb on - strand at 508.054 kb on - strand at 508.084 kb on + strand at 508.085 kb on - strand at 508.097 kb on + strand at 508.098 kb on - strand at 508.160 kb on + strand at 508.161 kb on - strand at 508.161 kb on - strand at 508.161 kb on - strand at 508.200 kb on + strand at 508.201 kb on - strand at 508.309 kb on + strand at 508.354 kb on - strand, within SMc01704 at 508.460 kb on + strand, within SMc01704 at 508.461 kb on - strand, within SMc01704 at 508.463 kb on - strand, within SMc01704 at 508.463 kb on - strand, within SMc01704 at 508.463 kb on - strand, within SMc01704 at 508.480 kb on + strand, within SMc01704 at 508.481 kb on - strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.840 kb on + strand, within SMc01704 at 508.841 kb on - strand, within SMc01704 at 508.841 kb on - strand, within SMc01704 at 509.003 kb on - strand at 509.003 kb on - strand at 509.046 kb on + strand at 509.047 kb on - strand at 509.047 kb on - strand at 509.047 kb on - strand at 509.098 kb on + strand at 509.173 kb on - strand at 509.200 kb on - strand at 509.200 kb on - strand at 509.200 kb on - strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.345 kb on + strand at 509.346 kb on - strand at 509.346 kb on - strand at 509.346 kb on - strand at 509.346 kb on - strand at 509.351 kb on + strand at 509.352 kb on - strand at 509.352 kb on - strand at 509.352 kb on - strand at 509.354 kb on - strand at 509.354 kb on - strand at 509.509 kb on + strand, within SMc01703 at 509.510 kb on - strand, within SMc01703 at 509.609 kb on + strand, within SMc01703 at 509.610 kb on - strand, within SMc01703 at 509.693 kb on - strand, within SMc01703 at 509.726 kb on - strand, within SMc01703 at 509.729 kb on - strand, within SMc01703 at 509.834 kb on - strand, within SMc01703 at 509.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 507,274 + SMc01706 0.48 +0.2 507,274 + SMc01706 0.48 -1.2 507,275 - SMc01706 0.48 -0.9 507,302 + SMc01706 0.53 -0.3 507,302 + SMc01706 0.53 -1.4 507,303 - SMc01706 0.53 +0.9 507,482 + SMc01706 0.84 -2.6 507,482 + SMc01706 0.84 +0.4 507,482 + SMc01706 0.84 -0.1 507,483 - +1.9 507,483 - SMc01706 0.84 -0.4 507,483 - SMc01706 0.84 -1.6 507,483 - SMc01706 0.84 +0.8 507,483 - SMc01706 0.84 -0.9 507,583 - +1.6 507,680 - SMc01705 0.15 +0.3 507,715 - SMc01705 0.22 +0.1 507,718 + SMc01705 0.23 -2.1 507,719 - SMc01705 0.23 -0.9 507,765 + SMc01705 0.33 -2.8 508,006 + SMc01705 0.84 +0.1 508,029 + SMc01705 0.89 +0.2 508,051 + +0.3 508,051 + -1.4 508,052 - +2.4 508,052 - -0.8 508,054 - -2.7 508,054 - -0.4 508,054 - -1.4 508,084 + -1.2 508,085 - -0.2 508,097 + -2.1 508,098 - +0.0 508,160 + -0.1 508,161 - -0.4 508,161 - +2.9 508,161 - +0.4 508,200 + -0.3 508,201 - +0.3 508,309 + -0.3 508,354 - SMc01704 0.13 +2.2 508,460 + SMc01704 0.29 +0.1 508,461 - SMc01704 0.29 -1.1 508,463 - SMc01704 0.29 +1.5 508,463 - SMc01704 0.29 +0.3 508,463 - SMc01704 0.29 +0.3 508,480 + SMc01704 0.32 -0.3 508,481 - SMc01704 0.32 -0.4 508,840 + SMc01704 0.85 +0.3 508,840 + SMc01704 0.85 -0.4 508,840 + SMc01704 0.85 -0.9 508,840 + SMc01704 0.85 -0.9 508,840 + SMc01704 0.85 +4.3 508,840 + SMc01704 0.85 +0.4 508,840 + SMc01704 0.85 +0.0 508,841 - SMc01704 0.85 +0.3 508,841 - SMc01704 0.85 -1.4 509,003 - +1.1 509,003 - +0.3 509,046 + -0.4 509,047 - +0.4 509,047 - +0.6 509,047 - +0.3 509,098 + +0.2 509,173 - +1.0 509,200 - +0.2 509,200 - +1.3 509,200 - +0.8 509,345 + +0.0 509,345 + +1.2 509,345 + -2.9 509,345 + +0.5 509,345 + -1.0 509,345 + -0.8 509,345 + -0.5 509,346 - -0.1 509,346 - -0.1 509,346 - -0.5 509,346 - +3.1 509,351 + +0.7 509,352 - +0.3 509,352 - -0.4 509,352 - -1.3 509,354 - +1.1 509,354 - +0.5 509,509 + SMc01703 0.12 +0.1 509,510 - SMc01703 0.12 -0.1 509,609 + SMc01703 0.35 +0.6 509,610 - SMc01703 0.35 +1.5 509,693 - SMc01703 0.55 -0.7 509,726 - SMc01703 0.62 +0.0 509,729 - SMc01703 0.63 +0.3 509,834 - SMc01703 0.87 +0.1 509,897 + -0.8
Or see this region's nucleotide sequence