Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01112 and SMc01111 are separated by 153 nucleotides SMc01111 and SMc01110 are separated by 138 nucleotides SMc01110 and SMc01109 are separated by 336 nucleotides
SMc01112: SMc01112 - hypothetical protein, at 442,384 to 443,547
SMc01112
SMc01111: SMc01111 - apolipoprotein N-acyltransferase, at 443,701 to 445,296
SMc01111
SMc01110: SMc01110 - DNA-binding protein, at 445,435 to 445,854
SMc01110
SMc01109: SMc01109 - S-adenosylmethionine synthetase, at 446,191 to 447,471
SMc01109
Position (kb) 443
444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.713 kb on + strand, within SMc01112 at 442.774 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.832 kb on - strand, within SMc01112 at 442.832 kb on - strand, within SMc01112 at 445.282 kb on - strand at 445.284 kb on + strand at 445.435 kb on - strand at 445.628 kb on + strand, within SMc01110 at 445.628 kb on + strand, within SMc01110 at 445.629 kb on - strand, within SMc01110 at 445.629 kb on - strand, within SMc01110 at 445.720 kb on + strand, within SMc01110 at 445.720 kb on + strand, within SMc01110 at 445.720 kb on + strand, within SMc01110 at 445.721 kb on - strand, within SMc01110 at 445.721 kb on - strand, within SMc01110 at 445.812 kb on - strand, within SMc01110 at 445.812 kb on - strand, within SMc01110 at 445.852 kb on + strand at 445.853 kb on - strand at 445.906 kb on + strand at 445.907 kb on - strand at 445.907 kb on - strand at 446.098 kb on + strand at 446.100 kb on + strand at 446.106 kb on + strand at 446.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 442,713 + SMc01112 0.28 +0.5 442,774 + SMc01112 0.34 -0.0 442,831 + SMc01112 0.38 -0.8 442,831 + SMc01112 0.38 -0.5 442,831 + SMc01112 0.38 -0.2 442,831 + SMc01112 0.38 -0.2 442,831 + SMc01112 0.38 +0.1 442,831 + SMc01112 0.38 +0.7 442,832 - SMc01112 0.38 -1.2 442,832 - SMc01112 0.38 +0.7 445,282 - +0.2 445,284 + -1.0 445,435 - -0.5 445,628 + SMc01110 0.46 -1.9 445,628 + SMc01110 0.46 -0.3 445,629 - SMc01110 0.46 -0.7 445,629 - SMc01110 0.46 -1.1 445,720 + SMc01110 0.68 -1.1 445,720 + SMc01110 0.68 -1.3 445,720 + SMc01110 0.68 -0.9 445,721 - SMc01110 0.68 -0.2 445,721 - SMc01110 0.68 +1.9 445,812 - SMc01110 0.90 -2.8 445,812 - SMc01110 0.90 -1.0 445,852 + -0.5 445,853 - +0.8 445,906 + -1.2 445,907 - +0.7 445,907 - +0.5 446,098 + +0.4 446,100 + +1.4 446,106 + +0.1 446,109 - -1.7
Or see this region's nucleotide sequence