Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00821 and SMc00822 are separated by 278 nucleotides SMc00822 and SMc00823 overlap by 1 nucleotides SMc00823 and SMc00824 are separated by 60 nucleotides
SMc00821: SMc00821 - hypothetical protein, at 843,040 to 843,336
SMc00821
SMc00822: SMc00822 - hypothetical protein, at 843,615 to 843,911
SMc00822
SMc00823: SMc00823 - hypothetical protein, at 843,911 to 844,306
SMc00823
SMc00824: SMc00824 - hypothetical protein, at 844,367 to 845,200
SMc00824
Position (kb) 843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 842.944 kb on + strand at 843.275 kb on - strand, within SMc00821 at 843.275 kb on - strand, within SMc00821 at 843.313 kb on + strand at 843.314 kb on - strand at 843.465 kb on - strand at 843.465 kb on - strand at 843.465 kb on - strand at 843.474 kb on + strand at 843.475 kb on - strand at 843.475 kb on - strand at 843.475 kb on - strand at 843.495 kb on + strand at 843.511 kb on + strand at 843.511 kb on + strand at 843.511 kb on + strand at 843.511 kb on + strand at 843.512 kb on - strand at 843.546 kb on - strand at 843.574 kb on + strand at 843.574 kb on + strand at 843.574 kb on + strand at 843.574 kb on + strand at 843.575 kb on - strand at 843.575 kb on - strand at 843.575 kb on - strand at 843.575 kb on - strand at 843.575 kb on - strand at 843.577 kb on + strand at 843.796 kb on + strand, within SMc00822 at 843.796 kb on + strand, within SMc00822 at 843.796 kb on + strand, within SMc00822 at 843.797 kb on - strand, within SMc00822 at 843.806 kb on + strand, within SMc00822 at 843.806 kb on + strand, within SMc00822 at 843.806 kb on + strand, within SMc00822 at 843.811 kb on - strand, within SMc00822 at 843.909 kb on + strand at 843.931 kb on - strand at 843.931 kb on - strand at 843.931 kb on - strand at 844.129 kb on + strand, within SMc00823 at 844.214 kb on - strand, within SMc00823 at 844.271 kb on + strand at 844.272 kb on - strand at 844.299 kb on - strand at 844.304 kb on + strand at 844.323 kb on + strand at 844.368 kb on + strand at 844.845 kb on + strand, within SMc00824 at 844.845 kb on + strand, within SMc00824 at 844.989 kb on + strand, within SMc00824 at 844.998 kb on + strand, within SMc00824 at 844.998 kb on + strand, within SMc00824 at 844.998 kb on + strand, within SMc00824 at 845.053 kb on + strand, within SMc00824 at 845.053 kb on + strand, within SMc00824 at 845.053 kb on + strand, within SMc00824 at 845.054 kb on - strand, within SMc00824 at 845.238 kb on + strand at 845.239 kb on - strand at 845.239 kb on - strand at 845.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 842,944 + +2.2 843,275 - SMc00821 0.79 -0.0 843,275 - SMc00821 0.79 -0.4 843,313 + -1.0 843,314 - -0.0 843,465 - -0.4 843,465 - -0.8 843,465 - -0.0 843,474 + +0.4 843,475 - -2.2 843,475 - +1.3 843,475 - -2.4 843,495 + +0.7 843,511 + +0.6 843,511 + +0.9 843,511 + -1.7 843,511 + +1.3 843,512 - +0.0 843,546 - +0.2 843,574 + +1.5 843,574 + -2.0 843,574 + +0.8 843,574 + +0.8 843,575 - -1.8 843,575 - +0.3 843,575 - +0.4 843,575 - +0.3 843,575 - -0.3 843,577 + -1.2 843,796 + SMc00822 0.61 -0.3 843,796 + SMc00822 0.61 -0.5 843,796 + SMc00822 0.61 -2.5 843,797 - SMc00822 0.61 +0.9 843,806 + SMc00822 0.64 +3.2 843,806 + SMc00822 0.64 +0.5 843,806 + SMc00822 0.64 -0.7 843,811 - SMc00822 0.66 +0.6 843,909 + +1.0 843,931 - -0.7 843,931 - +0.6 843,931 - -0.4 844,129 + SMc00823 0.55 +1.7 844,214 - SMc00823 0.77 +0.2 844,271 + +0.2 844,272 - +2.3 844,299 - -0.2 844,304 + +0.3 844,323 + +0.7 844,368 + +1.5 844,845 + SMc00824 0.57 -0.1 844,845 + SMc00824 0.57 -0.8 844,989 + SMc00824 0.75 -0.5 844,998 + SMc00824 0.76 +0.2 844,998 + SMc00824 0.76 +1.6 844,998 + SMc00824 0.76 -0.2 845,053 + SMc00824 0.82 -1.2 845,053 + SMc00824 0.82 +0.6 845,053 + SMc00824 0.82 +0.8 845,054 - SMc00824 0.82 -0.8 845,238 + +0.1 845,239 - +0.9 845,239 - -0.9 845,239 - -3.5
Or see this region's nucleotide sequence