Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00842 and SMc00810 are separated by 589 nucleotides SMc00810 and SMc00811 overlap by 4 nucleotides SMc00811 and SMc00812 are separated by 4 nucleotides
SMc00842: SMc00842 - tRNA-Gln, at 830,173 to 830,246
SMc00842
SMc00810: SMc00810 - hypothetical protein, at 830,836 to 832,176
SMc00810
SMc00811: SMc00811 - cell division protein, at 832,173 to 832,910
SMc00811
SMc00812: SMc00812 - hypothetical protein, at 832,915 to 833,298
SMc00812
Position (kb) 830
831
832
833 Strain fitness (log2 ratio) -1
0
1
2 at 829.916 kb on - strand at 830.007 kb on + strand at 830.007 kb on + strand at 830.007 kb on + strand at 830.067 kb on + strand at 830.068 kb on - strand at 830.095 kb on + strand at 830.096 kb on - strand at 830.125 kb on - strand at 830.128 kb on + strand at 830.145 kb on - strand at 830.148 kb on + strand at 830.471 kb on + strand at 832.908 kb on + strand at 832.908 kb on + strand at 832.908 kb on + strand at 832.922 kb on + strand at 832.922 kb on + strand at 832.922 kb on + strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.924 kb on + strand at 832.924 kb on + strand at 832.925 kb on - strand at 832.925 kb on - strand at 832.925 kb on - strand at 832.925 kb on - strand at 832.970 kb on - strand, within SMc00812
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 829,916 - -0.6 830,007 + +0.3 830,007 + +0.4 830,007 + -0.4 830,067 + -1.4 830,068 - -0.1 830,095 + +0.5 830,096 - -0.3 830,125 - +0.4 830,128 + -0.5 830,145 - +0.0 830,148 + +1.9 830,471 + -0.9 832,908 + -0.8 832,908 + -0.6 832,908 + +0.7 832,922 + -0.1 832,922 + +0.2 832,922 + +0.1 832,923 - -0.7 832,923 - +0.7 832,923 - -1.0 832,923 - -0.5 832,923 - -0.7 832,923 - -1.2 832,924 + +1.5 832,924 + -0.4 832,925 - -0.4 832,925 - +1.9 832,925 - -0.0 832,925 - -0.9 832,970 - SMc00812 0.14 -0.8
Or see this region's nucleotide sequence