Strain Fitness in Sinorhizobium meliloti 1021 around SMc00770

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00769 and SMc00770 are separated by 344 nucleotidesSMc00770 and SMc00771 are separated by 117 nucleotides SMc00769: SMc00769 - hypothetical protein, at 781,497 to 782,909 SMc00769 SMc00770: SMc00770 - putrescine-binding periplasmic protein, at 783,254 to 784,348 SMc00770 SMc00771: SMc00771 - putrescine ABC transporter ATP-binding protein, at 784,466 to 785,611 SMc00771 Position (kb) 783 784 785Strain fitness (log2 ratio) -2 -1 0 1 2 3at 782.265 kb on - strand, within SMc00769at 782.337 kb on + strand, within SMc00769at 782.373 kb on + strand, within SMc00769at 782.374 kb on - strand, within SMc00769at 782.374 kb on - strand, within SMc00769at 782.412 kb on + strand, within SMc00769at 782.413 kb on - strand, within SMc00769at 782.642 kb on - strand, within SMc00769at 782.642 kb on - strand, within SMc00769at 782.754 kb on + strand, within SMc00769at 782.950 kb on + strandat 782.950 kb on + strandat 782.952 kb on + strandat 782.952 kb on + strandat 782.952 kb on + strandat 782.952 kb on + strandat 782.952 kb on + strandat 782.952 kb on + strandat 782.952 kb on + strandat 782.953 kb on - strandat 782.953 kb on - strandat 782.953 kb on - strandat 782.953 kb on - strandat 783.019 kb on + strandat 783.020 kb on - strandat 783.132 kb on + strandat 783.132 kb on + strandat 783.215 kb on - strandat 783.219 kb on + strandat 783.220 kb on - strandat 783.220 kb on - strandat 783.236 kb on - strandat 783.253 kb on + strandat 783.253 kb on + strandat 783.253 kb on + strandat 783.253 kb on + strandat 783.310 kb on - strandat 783.345 kb on - strandat 783.346 kb on + strandat 783.346 kb on + strandat 783.347 kb on - strandat 783.347 kb on - strandat 783.360 kb on - strandat 783.373 kb on + strand, within SMc00770at 783.416 kb on + strand, within SMc00770at 783.416 kb on + strand, within SMc00770at 783.417 kb on - strand, within SMc00770at 783.627 kb on - strand, within SMc00770at 783.638 kb on + strand, within SMc00770at 783.639 kb on - strand, within SMc00770at 783.896 kb on - strand, within SMc00770at 783.921 kb on - strand, within SMc00770at 783.921 kb on - strand, within SMc00770at 783.922 kb on + strand, within SMc00770at 783.922 kb on + strand, within SMc00770at 783.922 kb on + strand, within SMc00770at 783.923 kb on - strand, within SMc00770at 783.923 kb on - strand, within SMc00770at 783.923 kb on - strandat 784.127 kb on + strand, within SMc00770at 784.167 kb on - strand, within SMc00770at 784.167 kb on - strand, within SMc00770at 784.176 kb on - strand, within SMc00770at 784.241 kb on + strandat 784.241 kb on + strandat 784.241 kb on + strandat 784.308 kb on + strandat 784.346 kb on + strandat 784.346 kb on + strandat 784.346 kb on + strandat 784.396 kb on - strandat 784.442 kb on - strandat 784.463 kb on + strandat 784.463 kb on + strandat 784.604 kb on + strand, within SMc00771at 784.604 kb on + strand, within SMc00771at 784.604 kb on + strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.759 kb on + strand, within SMc00771at 784.759 kb on + strand, within SMc00771at 784.760 kb on - strand, within SMc00771at 784.760 kb on - strand, within SMc00771at 784.775 kb on + strand, within SMc00771at 784.775 kb on + strand, within SMc00771at 785.189 kb on + strand, within SMc00771at 785.189 kb on + strand, within SMc00771at 785.241 kb on + strand, within SMc00771at 785.242 kb on - strand, within SMc00771at 785.276 kb on + strand, within SMc00771at 785.276 kb on + strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.280 kb on + strand, within SMc00771

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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782,265 - SMc00769 0.54 +0.7
782,337 + SMc00769 0.59 +0.7
782,373 + SMc00769 0.62 -0.1
782,374 - SMc00769 0.62 -0.5
782,374 - SMc00769 0.62 +0.5
782,412 + SMc00769 0.65 +0.5
782,413 - SMc00769 0.65 -0.8
782,642 - SMc00769 0.81 -0.8
782,642 - SMc00769 0.81 -0.0
782,754 + SMc00769 0.89 -0.4
782,950 + -0.9
782,950 + +0.4
782,952 + -1.0
782,952 + -0.3
782,952 + +0.0
782,952 + +0.7
782,952 + -0.6
782,952 + -0.7
782,952 + +1.0
782,953 - +0.3
782,953 - -0.2
782,953 - -0.1
782,953 - -0.2
783,019 + -1.4
783,020 - +0.0
783,132 + -1.1
783,132 + -0.4
783,215 - -0.1
783,219 + -1.4
783,220 - -2.2
783,220 - -0.6
783,236 - +0.5
783,253 + +0.0
783,253 + +1.5
783,253 + +1.3
783,253 + -2.3
783,310 - -1.3
783,345 - +0.4
783,346 + -0.6
783,346 + -0.4
783,347 - +0.3
783,347 - -1.4
783,360 - +0.2
783,373 + SMc00770 0.11 +0.1
783,416 + SMc00770 0.15 +0.9
783,416 + SMc00770 0.15 -0.7
783,417 - SMc00770 0.15 -2.0
783,627 - SMc00770 0.34 +0.6
783,638 + SMc00770 0.35 -1.8
783,639 - SMc00770 0.35 +0.5
783,896 - SMc00770 0.59 -2.2
783,921 - SMc00770 0.61 +0.2
783,921 - SMc00770 0.61 -1.6
783,922 + SMc00770 0.61 -1.3
783,922 + SMc00770 0.61 -0.0
783,922 + SMc00770 0.61 -0.5
783,923 - SMc00770 0.61 -0.0
783,923 - SMc00770 0.61 -2.4
783,923 - +2.9
784,127 + SMc00770 0.80 +0.3
784,167 - SMc00770 0.83 +0.4
784,167 - SMc00770 0.83 -0.3
784,176 - SMc00770 0.84 -0.4
784,241 + +0.2
784,241 + +0.7
784,241 + +0.4
784,308 + +0.5
784,346 + +0.8
784,346 + -1.4
784,346 + -0.4
784,396 - -0.4
784,442 - -0.1
784,463 + -0.0
784,463 + -1.6
784,604 + SMc00771 0.12 +2.5
784,604 + SMc00771 0.12 +3.2
784,604 + SMc00771 0.12 +0.0
784,605 - SMc00771 0.12 +0.2
784,605 - SMc00771 0.12 +0.4
784,605 - SMc00771 0.12 -1.5
784,605 - SMc00771 0.12 -2.6
784,605 - SMc00771 0.12 -1.4
784,605 - SMc00771 0.12 -1.0
784,759 + SMc00771 0.26 +0.4
784,759 + SMc00771 0.26 -1.3
784,760 - SMc00771 0.26 +0.4
784,760 - SMc00771 0.26 +0.2
784,775 + SMc00771 0.27 -0.9
784,775 + SMc00771 0.27 -2.2
785,189 + SMc00771 0.63 +0.2
785,189 + SMc00771 0.63 -1.1
785,241 + SMc00771 0.68 +0.3
785,242 - SMc00771 0.68 -0.4
785,276 + SMc00771 0.71 +2.7
785,276 + SMc00771 0.71 -1.2
785,277 - SMc00771 0.71 +0.2
785,277 - SMc00771 0.71 +0.2
785,277 - SMc00771 0.71 +0.3
785,277 - SMc00771 0.71 +0.2
785,280 + SMc00771 0.71 -0.4

Or see this region's nucleotide sequence