Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00460 and SMc00399 are separated by 213 nucleotides SMc00399 and SMc00400 are separated by 219 nucleotides
SMc00460: SMc00460 - hypothetical protein, at 347,376 to 348,509
SMc00460
SMc00399: SMc00399 - magnesium/cobalt transporter CorA, at 348,723 to 349,712
SMc00399
SMc00400: SMc00400 - signal peptide protein, at 349,932 to 351,059
SMc00400
Position (kb) 348
349
350 Strain fitness (log2 ratio) -1
0
1
2 at 347.773 kb on + strand, within SMc00460 at 347.773 kb on + strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand at 347.889 kb on + strand, within SMc00460 at 348.028 kb on + strand, within SMc00460 at 348.029 kb on - strand, within SMc00460 at 348.073 kb on + strand, within SMc00460 at 348.074 kb on - strand, within SMc00460 at 348.121 kb on + strand, within SMc00460 at 348.121 kb on + strand, within SMc00460 at 348.232 kb on + strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.497 kb on + strand at 348.498 kb on - strand at 348.706 kb on + strand at 348.725 kb on - strand at 348.725 kb on - strand at 348.725 kb on - strand at 348.748 kb on + strand at 348.754 kb on + strand at 348.754 kb on + strand at 348.755 kb on - strand at 348.755 kb on - strand at 348.755 kb on - strand at 348.793 kb on + strand at 348.793 kb on + strand at 348.800 kb on - strand at 349.087 kb on + strand, within SMc00399 at 349.699 kb on + strand at 349.699 kb on + strand at 350.254 kb on + strand, within SMc00400 at 350.254 kb on + strand, within SMc00400 at 350.515 kb on + strand, within SMc00400 at 350.516 kb on - strand, within SMc00400 at 350.516 kb on - strand, within SMc00400 at 350.570 kb on - strand, within SMc00400 at 350.570 kb on - strand, within SMc00400 at 350.707 kb on + strand, within SMc00400
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 347,773 + SMc00460 0.35 +0.2 347,773 + SMc00460 0.35 +1.0 347,774 - SMc00460 0.35 +0.1 347,774 - SMc00460 0.35 +0.5 347,774 - SMc00460 0.35 +2.0 347,774 - +0.4 347,889 + SMc00460 0.45 -0.4 348,028 + SMc00460 0.57 -0.9 348,029 - SMc00460 0.58 +1.0 348,073 + SMc00460 0.61 -0.5 348,074 - SMc00460 0.62 -1.2 348,121 + SMc00460 0.66 -0.3 348,121 + SMc00460 0.66 -0.2 348,232 + SMc00460 0.75 -0.0 348,233 - SMc00460 0.76 -0.5 348,233 - SMc00460 0.76 +0.2 348,233 - SMc00460 0.76 -0.5 348,233 - SMc00460 0.76 +0.1 348,233 - SMc00460 0.76 -0.7 348,497 + -1.4 348,498 - +0.1 348,706 + +0.5 348,725 - -0.3 348,725 - -1.2 348,725 - +0.1 348,748 + +0.0 348,754 + -0.8 348,754 + +0.8 348,755 - -1.7 348,755 - +0.2 348,755 - +0.6 348,793 + -0.1 348,793 + -0.0 348,800 - -0.1 349,087 + SMc00399 0.37 +0.0 349,699 + +0.6 349,699 + +1.3 350,254 + SMc00400 0.29 +0.9 350,254 + SMc00400 0.29 -0.2 350,515 + SMc00400 0.52 -0.0 350,516 - SMc00400 0.52 +0.8 350,516 - SMc00400 0.52 +0.4 350,570 - SMc00400 0.57 +1.8 350,570 - SMc00400 0.57 -0.4 350,707 + SMc00400 0.69 +0.2
Or see this region's nucleotide sequence