Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1753 and SMa1754 overlap by 4 nucleotides SMa1754 and SMa1755 are separated by 98 nucleotides
SMa1753: SMa1753 - ABC transporter permease, at 995,460 to 996,638
SMa1753
SMa1754: SMa1754 - ABC transporter ATP-binding protein, at 996,635 to 997,714
SMa1754
SMa1755: SMa1755 - ABC transporter substrate-binding protein, at 997,813 to 998,865
SMa1755
Position (kb) 996
997
998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.645 kb on - strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.648 kb on - strand, within SMa1753 at 995.653 kb on - strand, within SMa1753 at 995.790 kb on - strand, within SMa1753 at 995.800 kb on + strand, within SMa1753 at 995.840 kb on + strand, within SMa1753 at 995.841 kb on - strand, within SMa1753 at 996.053 kb on - strand, within SMa1753 at 996.542 kb on + strand at 996.542 kb on + strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.571 kb on - strand at 996.572 kb on + strand at 996.678 kb on + strand at 996.679 kb on - strand at 997.035 kb on + strand at 997.035 kb on + strand, within SMa1754 at 997.035 kb on + strand, within SMa1754 at 997.036 kb on - strand, within SMa1754 at 997.432 kb on + strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.449 kb on + strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.522 kb on + strand, within SMa1754 at 997.670 kb on - strand at 997.719 kb on - strand at 998.085 kb on + strand, within SMa1755 at 998.121 kb on + strand, within SMa1755 at 998.121 kb on + strand, within SMa1755 at 998.168 kb on + strand, within SMa1755 at 998.169 kb on - strand, within SMa1755 at 998.169 kb on - strand, within SMa1755 at 998.309 kb on + strand, within SMa1755 at 998.310 kb on - strand, within SMa1755 at 998.358 kb on + strand, within SMa1755 at 998.359 kb on - strand, within SMa1755 at 998.359 kb on - strand, within SMa1755 at 998.460 kb on - strand, within SMa1755 at 998.460 kb on - strand, within SMa1755 at 998.526 kb on + strand, within SMa1755 at 998.527 kb on - strand, within SMa1755 at 998.564 kb on + strand, within SMa1755
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 995,644 + SMa1753 0.16 -2.3 995,644 + SMa1753 0.16 -0.5 995,644 + SMa1753 0.16 +0.2 995,645 - SMa1753 0.16 -0.0 995,647 + SMa1753 0.16 -0.3 995,647 + SMa1753 0.16 +0.2 995,647 + SMa1753 0.16 +0.2 995,647 + SMa1753 0.16 +0.2 995,647 + SMa1753 0.16 +1.1 995,648 - SMa1753 0.16 -0.6 995,653 - SMa1753 0.16 -0.0 995,790 - SMa1753 0.28 +0.1 995,800 + SMa1753 0.29 -2.0 995,840 + SMa1753 0.32 +0.6 995,841 - SMa1753 0.32 +1.2 996,053 - SMa1753 0.50 +0.6 996,542 + +1.5 996,542 + -0.1 996,543 - +0.6 996,543 - +0.1 996,543 - +0.9 996,543 - +1.9 996,571 - -0.8 996,572 + +0.3 996,678 + -0.7 996,679 - -0.8 997,035 + +2.0 997,035 + SMa1754 0.37 -1.8 997,035 + SMa1754 0.37 -1.7 997,036 - SMa1754 0.37 -0.0 997,432 + SMa1754 0.74 -0.2 997,433 - SMa1754 0.74 +0.6 997,433 - SMa1754 0.74 -0.5 997,449 + SMa1754 0.75 +1.3 997,450 - SMa1754 0.75 -0.4 997,450 - SMa1754 0.75 +0.0 997,522 + SMa1754 0.82 -2.5 997,670 - -0.3 997,719 - -1.3 998,085 + SMa1755 0.26 -0.6 998,121 + SMa1755 0.29 -1.8 998,121 + SMa1755 0.29 -0.4 998,168 + SMa1755 0.34 -0.5 998,169 - SMa1755 0.34 -1.2 998,169 - SMa1755 0.34 -0.8 998,309 + SMa1755 0.47 -0.7 998,310 - SMa1755 0.47 -3.4 998,358 + SMa1755 0.52 -1.0 998,359 - SMa1755 0.52 -1.3 998,359 - SMa1755 0.52 +0.1 998,460 - SMa1755 0.61 -0.3 998,460 - SMa1755 0.61 +0.3 998,526 + SMa1755 0.68 +1.7 998,527 - SMa1755 0.68 +0.9 998,564 + SMa1755 0.71 -2.1
Or see this region's nucleotide sequence