Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1084 and SMa1086 are separated by 179 nucleotides SMa1086 and SMa1087 are separated by 101 nucleotides
SMa1084: SMa1084 - phosphoketolase, at 591,065 to 593,440
SMa1084
SMa1086: SMa1086 - hypothetical protein, at 593,620 to 594,294
SMa1086
SMa1087: SMa1087 - cation transport P-type ATPase, at 594,396 to 596,597
SMa1087
Position (kb) 593
594
595 Strain fitness (log2 ratio) -1
0
1
2 at 592.639 kb on + strand, within SMa1084 at 592.702 kb on + strand, within SMa1084 at 592.984 kb on - strand, within SMa1084 at 592.993 kb on + strand, within SMa1084 at 593.073 kb on + strand, within SMa1084 at 593.074 kb on - strand, within SMa1084 at 593.142 kb on + strand, within SMa1084 at 593.143 kb on - strand, within SMa1084 at 593.158 kb on - strand, within SMa1084 at 593.205 kb on + strand at 593.206 kb on - strand at 593.206 kb on - strand at 593.212 kb on + strand at 593.212 kb on + strand at 593.253 kb on + strand at 593.254 kb on - strand at 593.306 kb on - strand at 593.306 kb on - strand at 593.431 kb on + strand at 593.431 kb on + strand at 593.432 kb on - strand at 593.553 kb on + strand at 593.616 kb on - strand at 593.616 kb on - strand at 593.652 kb on + strand at 593.653 kb on - strand at 593.955 kb on + strand, within SMa1086 at 593.956 kb on - strand, within SMa1086 at 594.051 kb on + strand, within SMa1086 at 594.051 kb on + strand, within SMa1086 at 594.052 kb on - strand, within SMa1086 at 594.185 kb on - strand, within SMa1086 at 594.199 kb on + strand at 594.200 kb on - strand, within SMa1086 at 594.276 kb on + strand at 594.276 kb on + strand at 594.279 kb on + strand at 594.280 kb on - strand at 594.298 kb on - strand at 594.326 kb on - strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.423 kb on - strand at 594.495 kb on + strand at 594.495 kb on + strand at 594.521 kb on - strand at 594.646 kb on + strand, within SMa1087 at 594.825 kb on - strand, within SMa1087 at 594.868 kb on - strand, within SMa1087 at 594.943 kb on - strand, within SMa1087
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 592,639 + SMa1084 0.66 -0.2 592,702 + SMa1084 0.69 -0.1 592,984 - SMa1084 0.81 -1.3 592,993 + SMa1084 0.81 +1.2 593,073 + SMa1084 0.85 -1.0 593,074 - SMa1084 0.85 +0.4 593,142 + SMa1084 0.87 +0.2 593,143 - SMa1084 0.87 +0.6 593,158 - SMa1084 0.88 -0.3 593,205 + -1.0 593,206 - -0.3 593,206 - +0.3 593,212 + +1.0 593,212 + +0.2 593,253 + +0.0 593,254 - +0.9 593,306 - +0.4 593,306 - -0.4 593,431 + -0.4 593,431 + +1.1 593,432 - -0.1 593,553 + +0.2 593,616 - +0.7 593,616 - -0.8 593,652 + +0.2 593,653 - -0.1 593,955 + SMa1086 0.50 -0.4 593,956 - SMa1086 0.50 -1.2 594,051 + SMa1086 0.64 -0.1 594,051 + SMa1086 0.64 -0.1 594,052 - SMa1086 0.64 -0.6 594,185 - SMa1086 0.84 +0.2 594,199 + +1.9 594,200 - SMa1086 0.86 -0.7 594,276 + -1.1 594,276 + -0.3 594,279 + +0.3 594,280 - -0.0 594,298 - +0.4 594,326 - -0.2 594,422 + -0.3 594,422 + +0.9 594,423 - -1.1 594,495 + +0.3 594,495 + -0.1 594,521 - +0.4 594,646 + SMa1087 0.11 -1.2 594,825 - SMa1087 0.19 -0.4 594,868 - SMa1087 0.21 -0.2 594,943 - SMa1087 0.25 -0.2
Or see this region's nucleotide sequence