Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0817 and SMa0819 are separated by 11 nucleotides SMa0819 and SMa0822 are separated by 31 nucleotides
SMa0817: SMa0817 - oxidoreductase FixC, at 448,049 to 449,356
SMa0817
SMa0819: SMa0819 - FixB electron transfer flavoprotein alpha chain, at 449,368 to 450,429
SMa0819
SMa0822: SMa0822 - FixA electron transfer flavoprotein beta chain, at 450,461 to 451,339
SMa0822
Position (kb) 449
450
451 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 448.429 kb on + strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.521 kb on + strand, within SMa0817 at 448.530 kb on - strand, within SMa0817 at 448.574 kb on - strand, within SMa0817 at 448.593 kb on + strand, within SMa0817 at 448.593 kb on + strand, within SMa0817 at 448.668 kb on + strand, within SMa0817 at 448.668 kb on + strand, within SMa0817 at 448.833 kb on - strand, within SMa0817 at 448.964 kb on - strand, within SMa0817 at 449.016 kb on - strand, within SMa0817 at 449.110 kb on + strand, within SMa0817 at 449.111 kb on - strand, within SMa0817 at 449.205 kb on + strand, within SMa0817 at 449.206 kb on - strand, within SMa0817 at 449.206 kb on - strand, within SMa0817 at 449.206 kb on - strand, within SMa0817 at 449.210 kb on + strand, within SMa0817 at 449.211 kb on - strand, within SMa0817 at 449.211 kb on - strand, within SMa0817 at 449.212 kb on + strand, within SMa0817 at 449.212 kb on + strand, within SMa0817 at 449.213 kb on - strand, within SMa0817 at 449.213 kb on - strand, within SMa0817 at 449.242 kb on - strand at 449.293 kb on - strand at 449.314 kb on + strand at 449.315 kb on - strand at 449.508 kb on + strand, within SMa0819 at 449.508 kb on + strand, within SMa0819 at 449.509 kb on - strand, within SMa0819 at 449.509 kb on - strand, within SMa0819 at 449.509 kb on - strand, within SMa0819 at 449.575 kb on + strand, within SMa0819 at 449.579 kb on + strand, within SMa0819 at 449.579 kb on + strand, within SMa0819 at 449.777 kb on - strand, within SMa0819 at 449.777 kb on - strand, within SMa0819 at 449.874 kb on + strand, within SMa0819 at 449.899 kb on + strand, within SMa0819 at 449.900 kb on - strand, within SMa0819 at 449.946 kb on - strand, within SMa0819 at 449.946 kb on - strand, within SMa0819 at 449.946 kb on - strand, within SMa0819 at 450.016 kb on + strand, within SMa0819 at 450.016 kb on + strand, within SMa0819 at 450.017 kb on - strand, within SMa0819 at 450.017 kb on - strand, within SMa0819 at 450.090 kb on + strand, within SMa0819 at 450.091 kb on - strand, within SMa0819 at 450.201 kb on - strand, within SMa0819 at 450.237 kb on + strand, within SMa0819 at 450.238 kb on - strand, within SMa0819 at 450.385 kb on + strand at 450.396 kb on - strand at 450.644 kb on + strand, within SMa0822 at 450.790 kb on + strand, within SMa0822 at 450.790 kb on + strand, within SMa0822 at 450.791 kb on - strand, within SMa0822 at 450.807 kb on - strand, within SMa0822 at 450.807 kb on - strand, within SMa0822 at 450.900 kb on + strand, within SMa0822 at 450.901 kb on - strand, within SMa0822 at 451.185 kb on + strand, within SMa0822 at 451.328 kb on + strand at 451.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 448,429 + SMa0817 0.29 +0.5 448,430 - SMa0817 0.29 -0.4 448,430 - SMa0817 0.29 -1.2 448,430 - SMa0817 0.29 -0.5 448,430 - SMa0817 0.29 +0.4 448,521 + SMa0817 0.36 +0.1 448,530 - SMa0817 0.37 -0.8 448,574 - SMa0817 0.40 -0.2 448,593 + SMa0817 0.42 +0.8 448,593 + SMa0817 0.42 +0.5 448,668 + SMa0817 0.47 -0.9 448,668 + SMa0817 0.47 -0.3 448,833 - SMa0817 0.60 +1.4 448,964 - SMa0817 0.70 -0.4 449,016 - SMa0817 0.74 +1.4 449,110 + SMa0817 0.81 -1.0 449,111 - SMa0817 0.81 -0.3 449,205 + SMa0817 0.88 +1.2 449,206 - SMa0817 0.88 +0.1 449,206 - SMa0817 0.88 +1.4 449,206 - SMa0817 0.88 -0.5 449,210 + SMa0817 0.89 +0.1 449,211 - SMa0817 0.89 +0.2 449,211 - SMa0817 0.89 +0.0 449,212 + SMa0817 0.89 +1.1 449,212 + SMa0817 0.89 -1.2 449,213 - SMa0817 0.89 +1.7 449,213 - SMa0817 0.89 +0.1 449,242 - +0.7 449,293 - +0.9 449,314 + -0.1 449,315 - -1.5 449,508 + SMa0819 0.13 -0.2 449,508 + SMa0819 0.13 +0.5 449,509 - SMa0819 0.13 +0.7 449,509 - SMa0819 0.13 -0.2 449,509 - SMa0819 0.13 -0.9 449,575 + SMa0819 0.19 +2.3 449,579 + SMa0819 0.20 -2.6 449,579 + SMa0819 0.20 -0.0 449,777 - SMa0819 0.39 +0.0 449,777 - SMa0819 0.39 -0.0 449,874 + SMa0819 0.48 +0.1 449,899 + SMa0819 0.50 +0.3 449,900 - SMa0819 0.50 +1.1 449,946 - SMa0819 0.54 +1.2 449,946 - SMa0819 0.54 +1.0 449,946 - SMa0819 0.54 -0.1 450,016 + SMa0819 0.61 +0.8 450,016 + SMa0819 0.61 +0.3 450,017 - SMa0819 0.61 -0.8 450,017 - SMa0819 0.61 -1.5 450,090 + SMa0819 0.68 +1.9 450,091 - SMa0819 0.68 -2.1 450,201 - SMa0819 0.78 +0.7 450,237 + SMa0819 0.82 +0.0 450,238 - SMa0819 0.82 -0.3 450,385 + -0.7 450,396 - -0.1 450,644 + SMa0822 0.21 +0.7 450,790 + SMa0822 0.37 -0.2 450,790 + SMa0822 0.37 +0.2 450,791 - SMa0822 0.38 -0.4 450,807 - SMa0822 0.39 +2.8 450,807 - SMa0822 0.39 +2.5 450,900 + SMa0822 0.50 -2.3 450,901 - SMa0822 0.50 -0.2 451,185 + SMa0822 0.82 -1.7 451,328 + -0.7 451,329 - -0.1
Or see this region's nucleotide sequence