Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0665 and SMa0667 are separated by 497 nucleotides SMa0667 and SMa0669 are separated by 3 nucleotides
SMa0665: SMa0665 - hypothetical protein, at 353,876 to 355,030
SMa0665
SMa0667: SMa0667 - hypothetical protein, at 355,528 to 356,016
SMa0667
SMa0669: SMa0669 - hemolysin D, at 356,020 to 357,249
SMa0669
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 354.573 kb on - strand, within SMa0665 at 354.612 kb on + strand, within SMa0665 at 354.613 kb on - strand, within SMa0665 at 354.646 kb on + strand, within SMa0665 at 354.707 kb on + strand, within SMa0665 at 354.775 kb on + strand, within SMa0665 at 354.775 kb on + strand, within SMa0665 at 354.776 kb on - strand, within SMa0665 at 354.776 kb on - strand, within SMa0665 at 354.840 kb on + strand, within SMa0665 at 354.840 kb on + strand, within SMa0665 at 354.877 kb on + strand, within SMa0665 at 355.238 kb on + strand at 355.243 kb on + strand at 355.248 kb on + strand at 355.364 kb on + strand at 355.369 kb on - strand at 355.508 kb on + strand at 355.661 kb on - strand, within SMa0667 at 355.790 kb on + strand, within SMa0667 at 355.791 kb on - strand, within SMa0667 at 355.974 kb on - strand at 355.995 kb on + strand at 355.996 kb on - strand at 355.996 kb on - strand at 356.080 kb on + strand at 356.080 kb on + strand at 356.081 kb on - strand at 356.081 kb on - strand at 356.112 kb on - strand at 356.197 kb on + strand, within SMa0669 at 356.197 kb on + strand, within SMa0669 at 356.212 kb on - strand, within SMa0669 at 356.243 kb on + strand, within SMa0669 at 356.285 kb on - strand, within SMa0669 at 356.285 kb on - strand, within SMa0669 at 356.285 kb on - strand, within SMa0669 at 356.441 kb on + strand, within SMa0669 at 356.465 kb on - strand, within SMa0669 at 356.521 kb on - strand, within SMa0669 at 356.730 kb on - strand, within SMa0669 at 356.730 kb on - strand, within SMa0669 at 356.760 kb on + strand, within SMa0669 at 356.760 kb on + strand, within SMa0669 at 356.761 kb on - strand, within SMa0669 at 356.761 kb on - strand, within SMa0669 at 356.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 354,573 - SMa0665 0.60 +0.1 354,612 + SMa0665 0.64 -0.9 354,613 - SMa0665 0.64 -0.5 354,646 + SMa0665 0.67 -0.4 354,707 + SMa0665 0.72 +0.8 354,775 + SMa0665 0.78 -1.6 354,775 + SMa0665 0.78 +2.9 354,776 - SMa0665 0.78 -1.7 354,776 - SMa0665 0.78 +1.4 354,840 + SMa0665 0.83 -1.8 354,840 + SMa0665 0.83 -0.0 354,877 + SMa0665 0.87 +1.1 355,238 + +0.8 355,243 + -2.4 355,248 + -0.0 355,364 + -0.2 355,369 - -1.0 355,508 + +0.5 355,661 - SMa0667 0.27 -0.2 355,790 + SMa0667 0.54 -1.1 355,791 - SMa0667 0.54 -1.1 355,974 - +1.3 355,995 + -1.5 355,996 - -1.5 355,996 - -0.3 356,080 + -2.1 356,080 + +0.9 356,081 - -2.8 356,081 - +0.4 356,112 - -1.0 356,197 + SMa0669 0.14 +0.0 356,197 + SMa0669 0.14 +1.7 356,212 - SMa0669 0.16 +0.6 356,243 + SMa0669 0.18 +1.0 356,285 - SMa0669 0.22 +0.7 356,285 - SMa0669 0.22 -0.4 356,285 - SMa0669 0.22 -0.6 356,441 + SMa0669 0.34 -1.4 356,465 - SMa0669 0.36 -0.1 356,521 - SMa0669 0.41 +0.9 356,730 - SMa0669 0.58 +0.5 356,730 - SMa0669 0.58 +0.6 356,760 + SMa0669 0.60 +2.1 356,760 + SMa0669 0.60 -0.3 356,761 - SMa0669 0.60 +1.0 356,761 - SMa0669 0.60 +0.4 356,761 - +0.4
Or see this region's nucleotide sequence