Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0636 and SMa0637 are separated by 439 nucleotides SMa0637 and SMa0638 overlap by 4 nucleotides SMa0638 and SMa0639 are separated by 404 nucleotides
SMa0636: SMa0636 - hypothetical protein, at 341,499 to 342,152
SMa0636
SMa0637: SMa0637 - hypothetical protein, at 342,592 to 342,981
SMa0637
SMa0638: SMa0638 - hypothetical protein, at 342,978 to 343,235
SMa0638
SMa0639: SMa0639 - hypothetical protein, at 343,640 to 344,044
SMa0639
Position (kb) 342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 341.848 kb on + strand, within SMa0636 at 341.849 kb on - strand, within SMa0636 at 341.869 kb on + strand, within SMa0636 at 341.869 kb on + strand, within SMa0636 at 341.869 kb on + strand, within SMa0636 at 342.142 kb on - strand at 342.254 kb on + strand at 342.269 kb on + strand at 342.271 kb on + strand at 342.272 kb on - strand at 342.309 kb on + strand at 342.310 kb on - strand at 342.402 kb on - strand at 342.446 kb on + strand at 342.446 kb on + strand at 342.447 kb on - strand at 342.447 kb on - strand at 342.508 kb on + strand at 342.556 kb on + strand at 342.556 kb on + strand at 342.628 kb on + strand at 342.726 kb on - strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.873 kb on + strand, within SMa0637 at 342.874 kb on - strand, within SMa0637 at 342.932 kb on + strand, within SMa0637 at 343.036 kb on - strand, within SMa0638 at 343.180 kb on - strand, within SMa0638 at 343.363 kb on - strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.519 kb on + strand at 343.519 kb on + strand at 343.571 kb on + strand at 343.579 kb on - strand at 343.583 kb on - strand at 343.596 kb on - strand at 343.683 kb on + strand, within SMa0639 at 343.683 kb on + strand, within SMa0639 at 343.684 kb on - strand, within SMa0639 at 343.687 kb on + strand, within SMa0639 at 343.687 kb on + strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand at 343.688 kb on - strand, within SMa0639 at 343.716 kb on + strand, within SMa0639 at 343.756 kb on + strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.811 kb on + strand, within SMa0639 at 343.852 kb on - strand, within SMa0639 at 343.965 kb on - strand, within SMa0639 at 343.965 kb on - strand, within SMa0639
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 341,848 + SMa0636 0.53 +1.2 341,849 - SMa0636 0.54 +0.2 341,869 + SMa0636 0.57 +1.0 341,869 + SMa0636 0.57 +0.4 341,869 + SMa0636 0.57 +0.4 342,142 - +0.7 342,254 + -2.0 342,269 + +0.2 342,271 + +0.4 342,272 - -2.9 342,309 + -2.0 342,310 - -0.5 342,402 - +0.6 342,446 + -0.4 342,446 + -0.2 342,447 - -0.6 342,447 - -1.5 342,508 + -1.4 342,556 + +0.2 342,556 + +1.3 342,628 + -0.0 342,726 - SMa0637 0.34 -0.2 342,727 + SMa0637 0.35 +0.1 342,727 + SMa0637 0.35 -0.4 342,727 + SMa0637 0.35 +0.6 342,727 + SMa0637 0.35 -0.6 342,727 + SMa0637 0.35 +0.7 342,727 + SMa0637 0.35 -0.4 342,728 - SMa0637 0.35 +0.1 342,728 - SMa0637 0.35 -0.1 342,728 - SMa0637 0.35 -0.6 342,873 + SMa0637 0.72 -1.4 342,874 - SMa0637 0.72 -0.7 342,932 + SMa0637 0.87 -1.3 343,036 - SMa0638 0.22 +1.4 343,180 - SMa0638 0.78 +0.7 343,363 - -0.4 343,446 + +0.1 343,446 + +1.4 343,447 - +0.2 343,447 - -0.0 343,519 + -1.5 343,519 + -0.1 343,571 + -1.0 343,579 - -0.5 343,583 - -0.9 343,596 - -0.6 343,683 + SMa0639 0.11 -1.0 343,683 + SMa0639 0.11 -0.2 343,684 - SMa0639 0.11 +0.6 343,687 + SMa0639 0.12 -0.6 343,687 + SMa0639 0.12 -1.5 343,688 - SMa0639 0.12 +0.4 343,688 - SMa0639 0.12 -0.3 343,688 - SMa0639 0.12 +0.3 343,688 - +0.4 343,688 - SMa0639 0.12 +1.2 343,716 + SMa0639 0.19 +1.1 343,756 + SMa0639 0.29 -0.3 343,757 - SMa0639 0.29 -0.0 343,757 - SMa0639 0.29 -1.2 343,757 - SMa0639 0.29 -0.3 343,811 + SMa0639 0.42 +0.4 343,852 - SMa0639 0.52 -0.5 343,965 - SMa0639 0.80 +1.0 343,965 - SMa0639 0.80 -0.9
Or see this region's nucleotide sequence