Strain Fitness in Sinorhizobium meliloti 1021 around SMa0466

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0464 and SMa0466 are separated by 402 nucleotidesSMa0466 and SMa0467 are separated by 237 nucleotides SMa0464: SMa0464 - guanylate cyclase, at 248,442 to 251,618 SMa0464 SMa0466: SMa0466 - ABC transporter substrate-binding protein, at 252,021 to 253,625 SMa0466 SMa0467: SMa0467 - ABC transporter permease, at 253,863 to 254,879 SMa0467 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 251.059 kb on - strand, within SMa0464at 251.319 kb on + strandat 251.381 kb on - strandat 251.435 kb on - strandat 251.435 kb on - strandat 251.496 kb on + strandat 251.497 kb on - strandat 251.705 kb on + strandat 251.706 kb on - strandat 251.706 kb on - strandat 251.706 kb on - strandat 251.787 kb on + strandat 251.788 kb on - strandat 251.788 kb on - strandat 251.820 kb on + strandat 251.820 kb on + strandat 251.844 kb on + strandat 251.844 kb on + strandat 251.844 kb on + strandat 251.844 kb on + strandat 251.845 kb on - strandat 251.845 kb on - strandat 251.845 kb on - strandat 251.845 kb on - strandat 251.848 kb on + strandat 251.849 kb on - strandat 252.161 kb on + strandat 252.162 kb on - strandat 252.162 kb on - strandat 252.162 kb on - strandat 252.204 kb on + strand, within SMa0466at 252.205 kb on - strand, within SMa0466at 252.205 kb on - strand, within SMa0466at 252.205 kb on - strand, within SMa0466at 252.244 kb on + strand, within SMa0466at 252.316 kb on + strand, within SMa0466at 252.377 kb on + strand, within SMa0466at 252.377 kb on + strand, within SMa0466at 252.377 kb on + strand, within SMa0466at 252.377 kb on + strand, within SMa0466at 252.378 kb on - strand, within SMa0466at 252.397 kb on - strand, within SMa0466at 252.439 kb on - strand, within SMa0466at 252.534 kb on - strand, within SMa0466at 252.534 kb on - strand, within SMa0466at 252.534 kb on - strand, within SMa0466at 252.534 kb on - strand, within SMa0466at 252.850 kb on + strand, within SMa0466at 252.850 kb on + strand, within SMa0466at 252.856 kb on + strand, within SMa0466at 252.856 kb on + strand, within SMa0466at 252.857 kb on - strand, within SMa0466at 252.857 kb on - strand, within SMa0466at 252.857 kb on - strand, within SMa0466at 252.857 kb on - strand, within SMa0466at 252.858 kb on + strand, within SMa0466at 252.858 kb on + strand, within SMa0466at 252.859 kb on - strand, within SMa0466at 252.899 kb on + strand, within SMa0466at 252.902 kb on - strand, within SMa0466at 253.047 kb on + strand, within SMa0466at 253.047 kb on + strand, within SMa0466at 253.048 kb on - strand, within SMa0466at 253.052 kb on + strand, within SMa0466at 253.052 kb on + strand, within SMa0466at 253.069 kb on - strand, within SMa0466at 253.164 kb on + strand, within SMa0466at 253.164 kb on + strand, within SMa0466at 253.165 kb on - strand, within SMa0466at 253.165 kb on - strandat 253.165 kb on - strand, within SMa0466at 253.165 kb on - strand, within SMa0466at 253.202 kb on - strand, within SMa0466at 253.245 kb on - strand, within SMa0466at 253.263 kb on + strand, within SMa0466at 253.263 kb on + strand, within SMa0466at 253.263 kb on + strand, within SMa0466at 253.263 kb on + strand, within SMa0466at 253.264 kb on - strand, within SMa0466at 253.302 kb on + strand, within SMa0466at 253.302 kb on + strand, within SMa0466at 253.303 kb on - strand, within SMa0466at 253.303 kb on - strand, within SMa0466at 253.303 kb on - strand, within SMa0466at 253.303 kb on - strand, within SMa0466at 253.333 kb on - strand, within SMa0466at 253.555 kb on - strandat 253.557 kb on - strandat 253.590 kb on - strandat 253.623 kb on + strandat 253.731 kb on - strandat 253.739 kb on + strandat 253.809 kb on - strandat 253.979 kb on + strand, within SMa0467at 253.979 kb on + strand, within SMa0467at 253.980 kb on - strand, within SMa0467at 253.980 kb on - strand, within SMa0467at 253.980 kb on - strand, within SMa0467at 253.981 kb on + strand, within SMa0467at 253.981 kb on + strand, within SMa0467at 253.981 kb on + strand, within SMa0467at 253.982 kb on - strand, within SMa0467at 254.014 kb on + strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.124 kb on + strand, within SMa0467at 254.125 kb on - strand, within SMa0467at 254.125 kb on - strand, within SMa0467at 254.351 kb on + strand, within SMa0467at 254.352 kb on - strand, within SMa0467at 254.388 kb on + strand, within SMa0467at 254.388 kb on + strand, within SMa0467at 254.388 kb on + strand, within SMa0467at 254.389 kb on - strand, within SMa0467at 254.389 kb on - strand, within SMa0467at 254.389 kb on - strand, within SMa0467at 254.556 kb on + strand, within SMa0467at 254.557 kb on - strand, within SMa0467at 254.597 kb on + strand, within SMa0467at 254.611 kb on - strand, within SMa0467at 254.611 kb on - strand, within SMa0467

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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251,059 - SMa0464 0.82 -1.3
251,319 + +0.9
251,381 - +0.6
251,435 - +1.2
251,435 - -0.3
251,496 + +1.2
251,497 - +0.6
251,705 + -1.1
251,706 - -0.2
251,706 - -0.8
251,706 - +0.8
251,787 + -0.2
251,788 - +0.3
251,788 - +0.1
251,820 + +0.4
251,820 + +0.4
251,844 + +1.0
251,844 + +0.4
251,844 + +2.3
251,844 + -0.4
251,845 - -0.3
251,845 - -0.5
251,845 - -0.4
251,845 - -0.4
251,848 + -0.1
251,849 - -0.1
252,161 + -0.2
252,162 - -0.6
252,162 - -0.5
252,162 - +0.8
252,204 + SMa0466 0.11 +0.3
252,205 - SMa0466 0.11 +1.3
252,205 - SMa0466 0.11 +0.8
252,205 - SMa0466 0.11 -0.6
252,244 + SMa0466 0.14 +0.4
252,316 + SMa0466 0.18 -0.7
252,377 + SMa0466 0.22 +0.7
252,377 + SMa0466 0.22 -0.4
252,377 + SMa0466 0.22 -0.3
252,377 + SMa0466 0.22 +0.6
252,378 - SMa0466 0.22 -0.1
252,397 - SMa0466 0.23 -0.2
252,439 - SMa0466 0.26 +1.2
252,534 - SMa0466 0.32 -0.4
252,534 - SMa0466 0.32 +0.6
252,534 - SMa0466 0.32 -0.6
252,534 - SMa0466 0.32 -0.2
252,850 + SMa0466 0.52 -0.9
252,850 + SMa0466 0.52 -0.9
252,856 + SMa0466 0.52 +0.8
252,856 + SMa0466 0.52 +0.8
252,857 - SMa0466 0.52 +1.6
252,857 - SMa0466 0.52 +0.6
252,857 - SMa0466 0.52 -1.1
252,857 - SMa0466 0.52 +0.6
252,858 + SMa0466 0.52 -0.1
252,858 + SMa0466 0.52 +0.1
252,859 - SMa0466 0.52 -1.7
252,899 + SMa0466 0.55 +5.1
252,902 - SMa0466 0.55 -1.8
253,047 + SMa0466 0.64 +1.2
253,047 + SMa0466 0.64 -0.2
253,048 - SMa0466 0.64 -0.2
253,052 + SMa0466 0.64 -0.2
253,052 + SMa0466 0.64 -1.4
253,069 - SMa0466 0.65 -1.7
253,164 + SMa0466 0.71 +0.2
253,164 + SMa0466 0.71 +0.6
253,165 - SMa0466 0.71 -1.2
253,165 - +0.4
253,165 - SMa0466 0.71 +1.0
253,165 - SMa0466 0.71 -0.1
253,202 - SMa0466 0.74 +0.1
253,245 - SMa0466 0.76 -0.4
253,263 + SMa0466 0.77 -0.8
253,263 + SMa0466 0.77 -1.7
253,263 + SMa0466 0.77 +1.5
253,263 + SMa0466 0.77 -0.1
253,264 - SMa0466 0.77 -0.4
253,302 + SMa0466 0.80 +0.9
253,302 + SMa0466 0.80 -1.0
253,303 - SMa0466 0.80 +0.0
253,303 - SMa0466 0.80 -1.0
253,303 - SMa0466 0.80 -2.2
253,303 - SMa0466 0.80 +0.3
253,333 - SMa0466 0.82 +0.5
253,555 - +0.6
253,557 - +0.6
253,590 - -0.9
253,623 + -1.1
253,731 - +0.5
253,739 + +1.0
253,809 - -0.1
253,979 + SMa0467 0.11 +1.2
253,979 + SMa0467 0.11 -1.0
253,980 - SMa0467 0.12 -1.4
253,980 - SMa0467 0.12 +0.2
253,980 - SMa0467 0.12 -1.5
253,981 + SMa0467 0.12 -0.7
253,981 + SMa0467 0.12 -0.6
253,981 + SMa0467 0.12 +2.0
253,982 - SMa0467 0.12 -1.0
254,014 + SMa0467 0.15 -0.2
254,015 - SMa0467 0.15 -0.2
254,015 - SMa0467 0.15 -0.0
254,015 - SMa0467 0.15 +1.6
254,015 - SMa0467 0.15 -0.4
254,015 - SMa0467 0.15 +0.6
254,124 + SMa0467 0.26 -1.5
254,125 - SMa0467 0.26 +0.5
254,125 - SMa0467 0.26 -2.6
254,351 + SMa0467 0.48 -0.4
254,352 - SMa0467 0.48 -0.1
254,388 + SMa0467 0.52 +0.2
254,388 + SMa0467 0.52 +0.3
254,388 + SMa0467 0.52 +0.2
254,389 - SMa0467 0.52 +0.6
254,389 - SMa0467 0.52 -1.5
254,389 - SMa0467 0.52 -0.1
254,556 + SMa0467 0.68 +0.8
254,557 - SMa0467 0.68 -0.1
254,597 + SMa0467 0.72 +0.4
254,611 - SMa0467 0.74 -0.7
254,611 - SMa0467 0.74 +0.1

Or see this region's nucleotide sequence