Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0431 and SMa0433 are separated by 530 nucleotides SMa0433 and SMa0436 are separated by 217 nucleotides
SMa0431: SMa0431 - hypothetical protein, at 232,436 to 233,029
SMa0431
SMa0433: SMa0433 - hypothetical protein, at 233,560 to 234,030
SMa0433
SMa0436: SMa0436 - hypothetical protein, at 234,248 to 234,631
SMa0436
Position (kb) 233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 232.863 kb on + strand, within SMa0431 at 233.176 kb on + strand at 233.184 kb on + strand at 233.218 kb on - strand at 233.342 kb on + strand at 233.414 kb on - strand at 233.414 kb on - strand at 233.419 kb on - strand at 233.603 kb on + strand at 233.604 kb on - strand at 233.698 kb on + strand, within SMa0433 at 233.704 kb on - strand, within SMa0433 at 234.087 kb on + strand at 234.087 kb on + strand at 234.087 kb on + strand at 234.088 kb on - strand at 234.194 kb on - strand at 234.194 kb on - strand at 234.286 kb on + strand at 234.287 kb on - strand, within SMa0436 at 234.287 kb on - strand, within SMa0436 at 234.359 kb on + strand, within SMa0436 at 234.359 kb on + strand, within SMa0436 at 234.360 kb on - strand, within SMa0436 at 234.366 kb on - strand, within SMa0436 at 234.366 kb on - strand, within SMa0436 at 234.372 kb on + strand, within SMa0436 at 234.373 kb on - strand, within SMa0436 at 234.403 kb on + strand, within SMa0436 at 234.403 kb on + strand, within SMa0436 at 234.410 kb on + strand, within SMa0436 at 234.492 kb on - strand, within SMa0436 at 234.592 kb on + strand, within SMa0436 at 234.593 kb on - strand at 234.715 kb on + strand at 234.725 kb on + strand at 234.726 kb on - strand at 234.726 kb on - strand at 234.742 kb on - strand at 234.747 kb on + strand at 234.755 kb on + strand at 234.755 kb on + strand at 234.756 kb on - strand at 234.883 kb on + strand at 234.884 kb on - strand at 234.884 kb on - strand at 234.925 kb on - strand at 234.976 kb on - strand at 234.976 kb on - strand at 235.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 232,863 + SMa0431 0.72 +1.0 233,176 + -0.5 233,184 + -0.0 233,218 - +0.4 233,342 + -0.3 233,414 - +0.6 233,414 - +0.3 233,419 - -0.5 233,603 + +0.4 233,604 - -0.1 233,698 + SMa0433 0.29 +0.6 233,704 - SMa0433 0.31 +0.7 234,087 + -0.2 234,087 + +1.7 234,087 + +0.1 234,088 - +0.9 234,194 - -0.2 234,194 - +0.3 234,286 + +0.4 234,287 - SMa0436 0.10 -2.0 234,287 - SMa0436 0.10 -2.8 234,359 + SMa0436 0.29 +0.2 234,359 + SMa0436 0.29 +0.3 234,360 - SMa0436 0.29 -0.6 234,366 - SMa0436 0.31 -1.2 234,366 - SMa0436 0.31 -1.4 234,372 + SMa0436 0.32 -0.0 234,373 - SMa0436 0.33 -0.9 234,403 + SMa0436 0.40 +0.1 234,403 + SMa0436 0.40 +0.1 234,410 + SMa0436 0.42 -0.5 234,492 - SMa0436 0.64 +0.1 234,592 + SMa0436 0.90 -0.2 234,593 - -0.5 234,715 + +0.3 234,725 + -0.4 234,726 - +0.1 234,726 - +1.0 234,742 - +0.3 234,747 + +0.3 234,755 + +0.1 234,755 + +0.0 234,756 - +0.4 234,883 + -0.3 234,884 - +0.3 234,884 - -1.0 234,925 - +0.7 234,976 - +2.4 234,976 - +2.6 235,011 - +0.4
Or see this region's nucleotide sequence