Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0374 and SMa0376 are separated by 317 nucleotides SMa0376 and SMa5018 are separated by 64 nucleotides SMa5018 and SMa0380 overlap by 1 nucleotides
SMa0374: SMa0374 - dioxygenase/lyase, at 200,116 to 201,048
SMa0374
SMa0376: SMa0376 - hydrolase, at 201,366 to 202,055
SMa0376
SMa5018: SMa5018 - hypothetical protein, at 202,120 to 202,407
SMa5018
SMa0380: SMa0380 - hydrolase, at 202,407 to 204,389
SMa0380
Position (kb) 201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2 at 200.443 kb on - strand, within SMa0374 at 200.672 kb on + strand, within SMa0374 at 200.672 kb on + strand, within SMa0374 at 200.672 kb on + strand at 200.673 kb on - strand, within SMa0374 at 200.685 kb on - strand, within SMa0374 at 200.717 kb on + strand, within SMa0374 at 200.772 kb on + strand, within SMa0374 at 200.772 kb on + strand, within SMa0374 at 200.884 kb on + strand, within SMa0374 at 200.885 kb on - strand, within SMa0374 at 200.926 kb on - strand, within SMa0374 at 200.979 kb on + strand at 200.980 kb on - strand at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.774 kb on + strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.918 kb on + strand, within SMa0376 at 201.918 kb on + strand, within SMa0376 at 201.919 kb on - strand, within SMa0376 at 201.919 kb on - strand, within SMa0376 at 201.978 kb on + strand, within SMa0376 at 201.984 kb on + strand, within SMa0376 at 201.984 kb on + strand, within SMa0376 at 201.985 kb on - strand, within SMa0376 at 201.985 kb on - strand, within SMa0376 at 202.017 kb on - strand at 202.053 kb on + strand at 202.053 kb on + strand at 202.054 kb on - strand at 202.129 kb on + strand at 202.130 kb on - strand at 202.136 kb on + strand at 202.137 kb on - strand at 202.171 kb on + strand, within SMa5018 at 202.360 kb on - strand, within SMa5018 at 202.504 kb on + strand at 202.504 kb on + strand at 202.504 kb on + strand at 202.740 kb on + strand, within SMa0380 at 202.741 kb on - strand, within SMa0380 at 202.741 kb on - strand, within SMa0380 at 202.741 kb on - strand, within SMa0380 at 202.947 kb on + strand, within SMa0380 at 202.947 kb on + strand, within SMa0380 at 202.993 kb on - strand, within SMa0380 at 202.993 kb on - strand, within SMa0380 at 203.048 kb on + strand, within SMa0380
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 200,443 - SMa0374 0.35 -0.3 200,672 + SMa0374 0.60 +0.7 200,672 + SMa0374 0.60 -0.2 200,672 + +1.7 200,673 - SMa0374 0.60 -0.1 200,685 - SMa0374 0.61 -0.5 200,717 + SMa0374 0.64 +0.8 200,772 + SMa0374 0.70 -0.8 200,772 + SMa0374 0.70 -0.3 200,884 + SMa0374 0.82 -0.8 200,885 - SMa0374 0.82 -0.9 200,926 - SMa0374 0.87 -2.6 200,979 + +0.2 200,980 - -0.2 201,718 + SMa0376 0.51 -0.3 201,718 + SMa0376 0.51 +1.0 201,718 + SMa0376 0.51 -0.6 201,718 + SMa0376 0.51 +0.1 201,719 - SMa0376 0.51 -0.5 201,719 - SMa0376 0.51 +0.0 201,719 - SMa0376 0.51 +0.4 201,719 - SMa0376 0.51 +0.2 201,719 - SMa0376 0.51 +0.2 201,719 - SMa0376 0.51 +2.3 201,774 + SMa0376 0.59 +0.6 201,775 - SMa0376 0.59 +2.4 201,775 - SMa0376 0.59 -0.4 201,775 - SMa0376 0.59 -0.8 201,775 - SMa0376 0.59 -0.1 201,918 + SMa0376 0.80 +0.5 201,918 + SMa0376 0.80 +1.4 201,919 - SMa0376 0.80 +0.4 201,919 - SMa0376 0.80 +0.6 201,978 + SMa0376 0.89 -0.4 201,984 + SMa0376 0.90 +0.0 201,984 + SMa0376 0.90 +2.1 201,985 - SMa0376 0.90 +0.9 201,985 - SMa0376 0.90 +1.5 202,017 - -1.6 202,053 + -2.0 202,053 + +2.0 202,054 - +1.0 202,129 + +2.5 202,130 - -0.3 202,136 + +0.4 202,137 - -1.6 202,171 + SMa5018 0.18 +0.2 202,360 - SMa5018 0.83 -1.1 202,504 + +0.6 202,504 + +2.0 202,504 + -1.3 202,740 + SMa0380 0.17 +0.1 202,741 - SMa0380 0.17 +0.3 202,741 - SMa0380 0.17 -0.3 202,741 - SMa0380 0.17 -1.9 202,947 + SMa0380 0.27 -0.2 202,947 + SMa0380 0.27 -0.2 202,993 - SMa0380 0.30 -0.2 202,993 - SMa0380 0.30 +0.7 203,048 + SMa0380 0.32 -0.2
Or see this region's nucleotide sequence